template/vcf2json.erb in bio-vcf-0.8.0 vs template/vcf2json.erb in bio-vcf-0.8.1
- old
+ new
@@ -1,8 +1,20 @@
+=HEADER
+<% require 'json' %>
+[
+ { "HEADER": {
+ "options": <%= options.to_h.to_json %>,
+ "files": <%= ARGV %>,
+ "version": "<%= BIOVCF_VERSION %>"
+ },
+
+=BODY
+
{
"seq:chr": "<%= rec.chrom %>" ,
"seq:pos": <%= rec.pos %> ,
"seq:ref": "<%= rec.ref %>" ,
"seq:alt": "<%= rec.alt[0] %>" ,
- "seq:maf": <%= rec.info.maf[0] %> ,
"dp": <%= rec.info.dp %> ,
-};
+},
+=FOOTER
+]