gff3parserec.rb in bio-gff3-0.8.6

- old
+ new

@@ -22,11 +22,11 @@
     # The fast line parse takes the least number of actions
     # to parse a GFF3 line (record).
     #
     module FastLineParser
 
-      include Helpers::Error
+      include Helpers::Logger
 
       # Returns a (partial) record, assuming it is a valid GFF3
       # format, no validation takes place, other than field counting (!)
       #
       # Start and End are always set to int values. ID and Parent 
@@ -42,14 +42,9 @@
         if fs.size != 9 
           error "Record should have 9 fields, but has #{fs.size} <#{string}>"
           return nil
         end
 
-        fs[GFF3_START]      = fs[GFF3_START].to_i
-        fs[GFF3_END]        = fs[GFF3_END].to_i
-        fs[GFF3_SCORE]      = fs[GFF3_SCORE].to_f 
-        fs[GFF3_PHASE]      = fs[GFF3_PHASE].to_i
-        fs[GFF3_ATTRIBUTES] = parse_attributes_fast(fs[GFF3_ATTRIBUTES],options)
         fs
       end
 
       def parse_attributes_fast attribstring, options = {}
         Hash[attribstring.split(/;/).map { | a |