Contents

<%
	hpo = @hash_vars[:hpo]
	def get_hpo_link(hpo_code)
		link = '-'
		if hpo_code != '-'
			link = "<a href=\"https://hpo.jax.org/app/browse/term/#{hpo_code}\">#{hpo_code}</a>"
		end
		return link
	end

	def get_gene_link(gene_code)
		link = '-'
		if gene_code != '-'
			link = "<a href=\"https://www.genenames.org/tools/search/#!/genes?query=#{gene_code}\">#{gene_code}</a>"
		end
		return link
	end

%>

<div style="width: 90%; background-color:#ecf0f1; margin: 0 auto;"> 
	<h1 style="text-align: center; background-color:#d6eaf8">List of HPOs found</h1>
	<%=
	table(id: :table_uniq_hpos, header: true, styled: 'dt', attrib: {'class' => 'table table-striped'}) do |data_array|
			header = data_array.shift
	        data_array.each do |row|
  				hpo_name = hpo.translate_id(row.first.to_sym)
				row << get_hpo_link(row.last)
				row[0] = hpo_name
	        end
	        header.unshift('HPO Name')
	        data_array.unshift(header)
	end
	%>
</div>

<div style="width: 90%; background-color:#ecf0f1; margin: 0 auto;"> 
	<h1 style="text-align: center; background-color:#d6eaf8">Input HPO quality control</h1>
	<%=
	table(id: :table1, header: true, styled: 'dt', attrib: {'class' => 'table table-striped'}) do |data_array|
	        header = data_array.shift
	        data_array.each do |row|
	            row.each_with_index do |cell, i|
					if i == 5
      					hpo_name, rejected = hpo.translate_ids([cell])
						row[i] = "#{hpo_name.first}, #{get_hpo_link(cell)}"
					elsif i == 6
						row[i] = cell.round(6)
					elsif i == 10
						genes = cell.split(',')
						row[i] = genes.map{|gene| get_gene_link(gene)}.join(',')
					end
				end
	        end
	        data_array.unshift(header)
	end
	%>
</div>

Version data entries

3 entries across 3 versions & 1 rubygems

Version	Path
pets-0.2.5	templates/reg2phen_report.erb
pets-0.2.4	templates/reg2phen_report.erb
pets-0.2.3	templates/reg2phen_report.erb