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Contents
require 'mspire/cv/param'
require 'mspire/cv/obo'
module Mspire
module CV
# a mass spec related CVParam.
module Param
# Takes one of these invocations:
#
# acc_num[, unit_acc_num]
# acc_num, value[, unit_acc_num]
#
# Where acc_num and unit_acc_num are strings containing valid accession
# numbers (e.g., 'MS:1000514' or 'UO:0000108'). Note that sometimes units are
# from obo's other than UO.
#
# returns a CV::Param object
def self.[](*args)
#puts "param args #{args.inspect}"
unit =
case args.size
when 1
nil
when 2
Mspire::CV::Param[args.pop] if args.last.is_a?(String) && args.last =~ /^[A-Za-z]+:/
when 3
Mspire::CV::Param[args.pop]
end
acc = args[0]
obo_type = acc[/([A-Za-z]+):/,1]
val = args[1]
if val
cast = Mspire::CV::Obo::CAST[acc]
(val = val.send(cast)) if cast
end
::CV::Param.new(obo_type, args[0], Mspire::CV::Obo::NAME[acc], val, unit)
end
end
end
end
Version data entries
33 entries across 33 versions & 1 rubygems