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# # = bio/db/biosql/biosql_to_biosequence.rb - Bio::SQL::Sequence to Bio::Sequence adapter module # # Copyright:: Copyright (C) 2008 # Naohisa Goto <ng@bioruby.org>, # Raoul Jean Pierre Bonnal # License:: The Ruby License # # $Id:$ # require 'bio/sequence' require 'bio/sequence/adapter' # Internal use only. Normal users should not use this module. # # Bio::SQL::Sequence to Bio::Sequence adapter module. # It is internally used in Bio::SQL::Sequence#to_biosequence. # module Bio::Sequence::Adapter::BioSQL extend Bio::Sequence::Adapter private def_biosequence_adapter :seq def_biosequence_adapter :entry_id def_biosequence_adapter :primary_accession def_biosequence_adapter :secondary_accessions def_biosequence_adapter :molecule_type #-- #TODO: identify where is stored data_class in biosql #++ def_biosequence_adapter :data_class def_biosequence_adapter :definition, :description def_biosequence_adapter :topology def_biosequence_adapter :date_created def_biosequence_adapter :date_modified def_biosequence_adapter :division def_biosequence_adapter :sequence_version def_biosequence_adapter :keywords def_biosequence_adapter :species def_biosequence_adapter :classification, :taxonomy def_biosequence_adapter :references def_biosequence_adapter :features def_biosequence_adapter :comments end #module Bio::Sequence::Adapter::BioSQL
Version data entries
9 entries across 9 versions & 4 rubygems