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Contents
require 'mspire/cv/paramable'
require 'mspire/mzml/list'
require 'pathname'
module Mspire
class Mzml
class SourceFile
include Mspire::CV::Paramable
extend Mspire::Mzml::List
# (required) An identifier for this file.
attr_accessor :id
# (required) Name of the source file, without reference to location
# (either URI or local path).
attr_accessor :name
# (required) URI-formatted location where the file was retrieved.
attr_accessor :location
# expands the path and sets the name and location. Sets the id to the
# basename.
def self.[](path, opts={})
(name, path) = uri_basename_and_path(path)
self.new(name, name, path)
end
# takes a filename (with a relative or expanded path) and returns the
# uri basename and path suitable for mzml files
def self.uri_basename_and_path(file)
pathname = Pathname.new(file)
dir = pathname.expand_path.dirname.to_s
dir = '/'+dir unless (dir[0] == '/')
[pathname.basename, 'file://'+ dir]
end
def initialize(id="sourcefile1", name="mspire-simulated", location='file://')
@id, @name, @location = id, name, location
params_init
yield(self) if block_given?
end
def to_xml(builder)
builder.sourceFile( id: @id, name: @name, location: @location ) do |sf_n|
super(sf_n)
end
builder
end
def self.from_xml(xml, ref_hash)
self.new(xml[:id], xml[:name], xml[:location]).describe_self_from_xml!(xml, ref_hash)
end
end
end
end
Version data entries
10 entries across 10 versions & 1 rubygems