Sha256: a4aa9503c3f4f423cef0b7ee0a213ef642aacd4da5f8f007993801f4acccc266
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Size: 699 Bytes
Versions: 20
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Stored size: 699 Bytes
Contents
require 'spec_helper'
require 'mspire/ident/peptide/db/io'
describe 'reading a peptide centric DB' do
before do
@pepcentric = TESTFILES + "/mspire/ident/peptide/db/uni_11_sp_tr.PEPTIDE_CENTRIC.yml"
end
it 'reads the file on disk with random access or is enumerable' do
Mspire::Ident::Peptide::Db::IO.open(@pepcentric) do |io|
io["AVTEQGHELSNEER"].should == %w(sp|P31946|1433B_HUMAN sp|P31946-2|1433B_HUMAN)
io["VRAAR"].should == ["tr|D3DX18|D3DX18_HUMAN"]
io["SILLY WILLY"].should be_nil
io.each_with_index do |key_prots, i|
key_prots.first.should be_an_instance_of String
key_prots.last.should be_a_kind_of Array
end
end
end
end
Version data entries
20 entries across 20 versions & 1 rubygems