Contents

<%
	hpo = @hash_vars[:hpo]
	def get_hpo_link(hpo_code)
		link = '-'
		if hpo_code != '-'
			link = "<a href=\"https://hpo.jax.org/app/browse/term/#{hpo_code}\">#{hpo_code}</a>"
		end
		return link
	end
%>

<div style="width: 90%; background-color:#ecf0f1; margin: 0 auto;"> 
	<h1 style="text-align: center; background-color:#d6eaf8">Average of patients by HPO profile average in clusters</h1>
	<p> Distribution of patients in clusters based on the average of phenotypes by profile. </p>
	<%= 
		plot = File.join(@hash_vars[:temp_folder], "clusters_distribution_#{@hash_vars[:cluster_name]}.pdf")
		if File.exists?(plot)
			embed_pdf(plot, 'width="800" height="800"') 
		else
			"<p> File not specified. </p>"
		end
	%>
</div>

<div style="width: 90%; background-color:#ecf0f1; margin: 0 auto;"> 
	<h1 style="text-align: center; background-color:#d6eaf8">Patient HPO profiles by cluster.</h1>
		<%= table(id: :clusters, header: true, border: 2, row_names: false, text: true, 
			cell_align: %w( center )) do |data|
				data.each do |element|
					#STDERR.puts element.inspect
					element[2] = element[2].map{|patID| "<p>#{patID}</p>" }.join("\n")
					element[3] = element[3].map{|profile| "<p>#{profile.map{|hpo_code| get_hpo_link(hpo_code)}.join(', ')}</p>" }.join("\n")
					element[4] = element[4].map{|transl_profile| "<p>#{transl_profile.join(', ')}</p>"}.join("\n")
				end
				data.unshift(["Cluster ID","Patients in Cluster","Patient IDs", "HPO codes", "Phenotypes"])				
			end
		%>
</div>

Version data entries

2 entries across 2 versions & 1 rubygems

Version	Path
pets-0.2.4	templates/cluster_report.erb
pets-0.2.3	templates/cluster_report.erb