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Contents
require 'spec_helper'
require 'obo/ms'
require 'obo/ims'
require 'obo/unit'
describe 'accessing a specific Obo::Ontology' do
it 'can access MS obo' do
Obo::MS.id_to_name['MS:1000004'].should == 'sample mass'
Obo::MS.name_to_id['sample mass'].should == 'MS:1000004'
Obo::MS.id_to_element['MS:1000004'].should be_a(Obo::Stanza)
end
it 'can access IMS obo' do
Obo::IMS.id_to_name['IMS:1000004'].should == 'image'
Obo::IMS.name_to_id['image'].should == 'IMS:1000004'
Obo::IMS.id_to_element['IMS:1000004'].should be_a(Obo::Stanza)
end
it 'can access Unit obo' do
Obo::Unit.id_to_name['UO:0000005'].should == 'temperature unit'
Obo::Unit.name_to_id['temperature unit'].should == 'UO:0000005'
Obo::Unit.id_to_element['UO:0000005'].should be_a(Obo::Stanza)
end
end
describe 'Obo::Stanza' do
it 'can properly cast values' do
Obo::MS.id_to_element['MS:1000511'].cast('1').should == 1
Obo::MS.id_to_element['MS:1000004'].cast('2.2').should == 2.2
# don't ask me why mass resolution is cast into a string, but it is!
Obo::MS.id_to_element['MS:1000011'].cast('2.2').should == '2.2'
Obo::MS.id_to_element['MS:1000018'].cast('low to high').should == 'low to high'
end
end
Version data entries
33 entries across 33 versions & 1 rubygems