# -*- encoding: utf-8 -*-
# stub: ngs-ci 0.0.2.b ruby lib

Gem::Specification.new do |s|
  s.name = "ngs-ci".freeze
  s.version = "0.0.2.b".freeze

  s.required_rubygems_version = Gem::Requirement.new("> 1.3.1".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["Matthew Ralston".freeze]
  s.date = "2015-12-21"
  s.description = "Calculated a metric that estimates read complexity at each base for RNA-seq BAM files. Alternative to pileup format.".freeze
  s.email = ["mrals89@gmail.com".freeze]
  s.executables = ["ngs-ci".freeze]
  s.files = [".coveralls.yml".freeze, ".gitignore".freeze, ".rspec".freeze, ".travis.yml".freeze, "Gemfile".freeze, "LICENSE.txt".freeze, "README.md".freeze, "Rakefile".freeze, "TODO.md".freeze, "TODO.org".freeze, "bin/ngs-ci".freeze, "lib/NGSCI.rb".freeze, "lib/NGSCI/calculator.rb".freeze, "lib/NGSCI/cmd.rb".freeze, "lib/NGSCI/read.rb".freeze, "lib/NGSCI/version.rb".freeze, "ngs-ci.gemspec".freeze, "spec/lib/NGSCI_spec.rb".freeze, "spec/lib/bin_spec.rb".freeze, "spec/lib/calculator_spec.rb".freeze, "spec/lib/cmd_spec.rb".freeze, "spec/lib/read_spec.rb".freeze, "spec/spec_helper.rb".freeze, "spec/test_files/empty.bam".freeze, "spec/test_files/saturated.bam".freeze, "spec/test_files/saturated.bam.bai".freeze, "spec/test_files/test.bam".freeze, "spec/test_files/test.bam.bai".freeze, "spec/test_files/test.fa".freeze]
  s.homepage = "".freeze
  s.licenses = ["GPL v3".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "Next Generation Sequencing Complexity Index.".freeze
  s.test_files = ["spec/lib/NGSCI_spec.rb".freeze, "spec/lib/bin_spec.rb".freeze, "spec/lib/calculator_spec.rb".freeze, "spec/lib/cmd_spec.rb".freeze, "spec/lib/read_spec.rb".freeze, "spec/spec_helper.rb".freeze, "spec/test_files/empty.bam".freeze, "spec/test_files/saturated.bam".freeze, "spec/test_files/saturated.bam.bai".freeze, "spec/test_files/test.bam".freeze, "spec/test_files/test.bam.bai".freeze, "spec/test_files/test.fa".freeze]

  s.specification_version = 4

  s.add_runtime_dependency(%q<trollop>.freeze, ["~> 2.1.2".freeze])
  s.add_runtime_dependency(%q<bio-samtools>.freeze, ["= 2.3.2".freeze])
  s.add_runtime_dependency(%q<parallel>.freeze, ["~> 1.4".freeze])
  s.add_runtime_dependency(%q<yell>.freeze, ["~> 2".freeze])
  s.add_runtime_dependency(%q<ruby-prof>.freeze, ["~> 0.15".freeze])
  s.add_development_dependency(%q<bundler>.freeze, ["~> 1".freeze])
  s.add_development_dependency(%q<rake>.freeze, ["~> 10.0".freeze])
  s.add_development_dependency(%q<rspec>.freeze, ["~> 3.1".freeze])
  s.add_development_dependency(%q<pry>.freeze, ["~> 0".freeze])
  s.add_development_dependency(%q<coveralls>.freeze, ["~> 0".freeze])
end