genevalidator-2.1.4

https://rubygems.org

genevalidator

quick gemspec

.gem

.gem metadata (gemspec)

.gemspec

id: 724174

number: 2.1.4

platform: ruby

spec_sha256: 02c3416ce0abc8cf62c78b211ef2402e997cc7b06ffb5f1670b3398b2be54f9a

sha256: de11e9c4a9417e44bafad873d9f76bcde46667992e2ce86cbbdfdda9b6fb4c77

created_at: 2024-05-13 08:24:47 UTC

updated_at: 2024-06-10 06:26:34 UTC

position: 1

version_data_entries_count: 97

uploaded_at: 2018-08-15 19:48:26 UTC

indexed: true

has_extensions:

extensions:

Gem size: 3.06 MB

Version Data Entries

Total: 97

Unpacked size: 17.4 MB

Full NameModeUIDGIDMtimeLinknameSizeSHA
.gitignore10064400444 Bytesbec861408de42fe7eb71ff0064b27a67a4f14139cce0ee677240ac44004d8aac
.ruby-version100644003 Bytes914204c25f3f144ddec3469c61a6faea695c87590ab78a5eb25b0f3904cf84e0
.travis.yml10064400589 Bytesdb4e1ce32276ee8befd6cf6930d6c95edce97df07ae1c1bca172b3931ec032ee
Gemfile10064400121 Bytes0b968dd46ce4226ac116242d2b9c9abf5b0f68bee147874de03842a90b256352
Gemfile.lock100644003.09 KB9bc25eb2eb9b948b2e8aff251899993a537bf7d6c9ddcab88073167db84a9818
LICENCE.txt1006440033.7 KB76a97c878c9c7a8321bb395c2b44d3fe2f8d81314d219b20138ed0e2dddd5182
README.md1006440014.8 KB0a580cd619a1594735dd2503074fc509748da8e8be6cbfb32a4ca99a08fbc146
Rakefile1006440013.3 KBeca8c75ac7a5d2a0f424d502990906e5485c29e569d75c1e96f1dd60ed6dc3d9
aux/gv_results.slim100644006.74 KB6da754b46fd79f2d9ea14f7e264efe57e1384c538202e7f6ab524a2f7c33450b
aux/html_files/css/gv.compiled.min.css10064400122 KB25e2af99ec6f446b637ded0242ea934713c9dd7ac52187ac9c931ad8e699eef8
aux/html_files/css/src/bootstrap.min.css1007550097.6 KBe9503448692b738dd260fbd7f7cabf2e11f09b600fa97e6eb3a56eba5b1a7e9b
aux/html_files/css/src/font-awesome.min.css1006440020.3 KBb769324e0921f9f649611113e65f528ebae5e140da8a7e63c5d6ea7bc7a33bc0
aux/html_files/css/src/style.css100644005.56 KB796dabd6a2bbab0a3f423ec0da3d0610ce355648715e18c56e8c0e97681844cb
aux/html_files/fonts/FontAwesome.otf1006440073.4 KBf7b60acb8a44554b59ef3c31bae942be65e0f1045b55400807a2ac6fde2949ba
aux/html_files/fonts/fontawesome-webfont.eot1007550070.8 KB9f8288933d2c87ab3cdbdbda5c9fa1e1e139b01c7c1d1983f91a13be85173975
aux/html_files/fonts/fontawesome-webfont.svg10075500248 KB4f1f9ffe01469bbd03b254ec563c304dd92276514110364148cb7ffdd75d3297
aux/html_files/fonts/fontawesome-webfont.ttf10075500138 KBc2a9333b008247abd42354df966498b4c2f1aa51a10b7e178a4f5df2edea4ce1
aux/html_files/fonts/fontawesome-webfont.woff1007550081.8 KB66db52b456efe7e29cec11fa09421d03cb09e37ed1b567307ec0444fd605ce31
aux/html_files/img/gene.png1006440039.6 KB9581ec23df1c61b4b8bc8003941bca7ddb555ad6624b874cdd15ad82212d8ed6
aux/html_files/js/gv.compiled.min.js10064400296 KBb53588a14c7e3bcdeb4edfcff5a0e4aaea8cae61e9336312b4872907bc3a5739
aux/html_files/js/src/bootstrap.min.js1006440031.1 KB24cc29533598f962823c4229bc280487646a27a42a95257c31de1b9b18f3710f
aux/html_files/js/src/d3.v3.min.js10064400141 KB746db88be3fcfe387cd2d613a58f89cbcbad3fdbb2c780ff569fdf1969d65e8e
aux/html_files/js/src/jquery-2.1.1.min.js1006440082.3 KB874706b2b1311a0719b5267f7d1cf803057e367e94ae1ff7bf78c5450d30f5d4
aux/html_files/js/src/jquery.tablesorter.min.js1007550030 KBb672bb5abc6f3ce67bc944936a80f69a7bee7add1be301a046144fa0c77d3b1a
aux/html_files/js/src/plots.js1006440025.9 KB3cd6ca1cd9cc48eff60b93f69e904008e57776d0107b07215e4215510097b0c0
aux/html_files/js/src/script.js100644001.32 KB926677c77619f04ac12b3a2da1f7cf49a395c23089cbd15201361a467519069a
aux/html_files/json/.gitkeep100644000 Bytese3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
bin/genevalidator1007550014 KBa39534fe6bb33e2de5fccf8e9ac8a3870d7d527dfc5679631335b80f03ab599f
exemplar_data/README.md100644002.16 KB20f4bea42673595f05703a205e3847fb9a176fe104ca8bf6bcd58345a5b516e5
exemplar_data/mrna_data.fa1006440014.3 KB016a93e882edbb319de6a0b1f2e36221294aef84e8a97180579b757d72d66184
exemplar_data/protein_data.fa100644006.58 KBce865ce225062dea2fc46f3017e6d31dad3c45f5dceac3c1b833b3b8726639fd
genevalidator.gemspec100644002.4 KB5c2e22051b5636969fd72a8d8362d0e7609c343f2a0f4e0cf819ca0076e7a198
install.sh100755002.17 KBe12d3bff65754f4a55377fae572dcfdbff502f17f837d8a98b3d0ab1ab06a031
lib/genevalidator.rb100644008.13 KBedcc1bc8b241bcf5b7b5090795b071d9c87a35df3b2ef4b0e3a8dcf58424d82d
lib/genevalidator/arg_validation.rb100644005.83 KBa9cedff04254add2bca0e4d92df8cfb3eade18c6af5e40e649ec4c05b1bd4d40
lib/genevalidator/blast.rb100644005.07 KB13ba5d47b903bb8b45b1ee523418cc9ff689afbddd6832ce318ab99c6c46e7d8
lib/genevalidator/clusterization.rb1006440013.7 KB8c90d41dacf26c6e885074adddfbc116a97543352992bee5c448b8b8ce42be13
lib/genevalidator/exceptions.rb100644002.8 KB3118a3b198626eab0b1c51595266db8824425c6940fbbe646fd615dcda99db4c
lib/genevalidator/ext/array.rb100644001.16 KBb7c7ae245938109fa4282ecd37735650fc28f1da202a1fda7f0292bbb3af01eb
lib/genevalidator/get_raw_sequences.rb100644008.05 KB27da8386d25ad32ac6b450280c05e16960f9e1d9a0c41123b959dc9127572ad2
lib/genevalidator/hsp.rb100644003.36 KBd7341a2368693953a690674fe220eff8b70c3396028d9274df8729a850841f2d
lib/genevalidator/json_to_gv_results.rb100644002.08 KBb532abd577f2d7a22af67a54455ce2a72b4ad5195457ba544a364767d0233368
lib/genevalidator/output.rb100644008.45 KBe3c5b4bdde603e9ac7ceeb686a82e9f7f7f3cf1c4a9fd2be2960680dffd643d6
lib/genevalidator/output_files.rb100644004.77 KBc411d3f4c429b3112ff11d0fbd698fe3f6a49e7e9f22440815ee43a92b2772e7
lib/genevalidator/pool.rb100644001.87 KB11a90e4e857f282245d18d8d08c2e011563a04c071a5bf2a210e84d3ead6be41
lib/genevalidator/query.rb100644001.12 KB4b38631e160e95bb44e759de2cef3d99e69c26a45995bc73ce35e318dc8c1179
lib/genevalidator/tabular_parser.rb100644002 KB06e35f691698a3361075b394135ae9a0e2568b735dcf8de99135a2e1130a03a3
lib/genevalidator/validation.rb100644009.08 KBe8380b1b68d018f8934c3004c01d35ca7ebcaf4e345a46037c62ccca2822bbcf
lib/genevalidator/validation_alignment.rb1006440017.3 KB91a731c9e29f536d36a76efd24fdb044b3ac7d4879a9a3ef552aa287b5312c32
lib/genevalidator/validation_blast_reading_frame.rb100644004.3 KBfe691074e4aa12a86266e115b9db22b196e700d41b9ce296a87613b3ff3ac23b
lib/genevalidator/validation_duplication.rb100644009.48 KB297c9bfc5fb83090d518472a6569565b0a1cbe58eb0b4db5175d2028293d33f2
lib/genevalidator/validation_gene_merge.rb1006440011 KB00d611ebf304d4a93f4b1bbae9f61bb43b4a6ddea38a6bfd77204ab4c9d33358
lib/genevalidator/validation_length_cluster.rb100644007.44 KB65c681b7664ee30c601e26beeb8db82b4261586c46bf7156445ec9b5b5734311
lib/genevalidator/validation_length_rank.rb100644005.85 KBce1ce7703019609addfcb1b0293bf8eff7e4a0e1ae792f5626ce9342f52917ad
lib/genevalidator/validation_maker_qi.rb100644004.02 KBc58da0e5795e9ca909001eacc9c39de123f24ea6d354dfff9ecbe59dc291c11d
lib/genevalidator/validation_open_reading_frame.rb100644006.44 KBe003c9a3086bf3b52aee4fa7dc8f5ea31e40ee6363d66388721c73f215d048a7
lib/genevalidator/validation_report.rb100644001.91 KB2027213aece1a2b35f90283f08551673b272fa5d6dfefb6488a9cc89c859e226
lib/genevalidator/validation_test.rb100644001.31 KBa57af4f82110e67b8b6cbb2aebe660b9541fd2a94de9c2304d9bd1ed82b798b5
lib/genevalidator/version.rb1006440052 Bytes0cabebb8b7c09b03ba60d32796b2c0827a3ff04954b50618fe4142cb2a882b3c
test/Readme.md100644003.24 KB646338da7d20ce94dbcc31cfde0998a4c29193066a6b50b40b2da422143ad5f4
test/overall.rb100755001.32 KBfb4c562ea330ebb0b142d2d59e8ab0a8c48a8f92c8363f8515c93ba1a4c37efd
test/test_all_validations.rb100644004.52 KB0cc35d6efe2180842da739bc0144b3561285a0d7ffe51b66e1ae77ae5c1efadf
test/test_blast.rb1006440012.7 KBa2d6f836120f397fa23828b4afb16af1e3634442c346c2b1f3891efc43c30961
test/test_clusterization.rb100644001.25 KB4963ae805dfd30391b446dfdf0d3ba5d6e7b5ba6b5c44dfa7cf14a5cf6e7a71b
test/test_clusterization_2d.rb100644001.63 KBc5115f48e609c84aa35152647c78bbfbc92e8d277079b8d7334f3e0ef2091030
test/test_extended_array_methods.rb10064400430 Bytes81a4b7b286e407d93a28a169bae0054739f7c447587f9fdbe67cce70b728536d
test/test_files/all_validations_mrna/mrna.blast_tab610064400482 KBf0c9139f096a770bb5ee98f27dcbc881230c3ccd7b3e52f01916a2ccb024d8c5
test/test_files/all_validations_mrna/mrna.blast_tab710064400485 KB2cba76f6d41884ffd1af5917feb5b5f192ad345231375d0410678c003e83b552
test/test_files/all_validations_mrna/mrna.blast_xml100644001.77 MB9a40efba8e37154207011a7da6911cf17c942cb707445ed08576b9655dbb2c54
test/test_files/all_validations_mrna/mrna.blast_xml.index1006440015.4 KBadbe6a836dcdcbbb2f5f20fede81545eeae3217ecf378a33fdc50194acc7e839
test/test_files/all_validations_mrna/mrna.fa1006440040.1 KBfff27720303090185949e56a5fb96752659526248a065d1f83c5dd5c555a5a34
test/test_files/all_validations_mrna/mrna.raw_seq10064400245 KBb9b8f8a7967c3b5813441d0d05256e687340a35191a85808e3ec06a37e3ef6ee
test/test_files/all_validations_mrna/mrna.raw_seq.idx1006440024.2 KB0ca6d4be3713dde0b5f6baaadbbb435290d6d9c978a7c65d73c64d248dc5fe0b
test/test_files/all_validations_prot/prot.blast_tab6100644001.16 MBccaeb266890fe3a81722e7c5e364a87de72ac418ecae2f0a04d79848d8b49dac
test/test_files/all_validations_prot/prot.blast_tab7100644001.17 MBa7c0494421ddfe436515ed586d77473efc82f3e6a542baa18e800b6bb4f1d01b
test/test_files/all_validations_prot/prot.blast_xml100644003.34 MB80dfe0e87da33d0c9952baaebdee1efb4e443b8e3b04079d68c11636c9547e0f
test/test_files/all_validations_prot/prot.blast_xml.index1006440034.7 KB680cde068f2792cef9b9bd74f70348cdb4fd8fc3b61c2d0a1c89fe4f29cf88fa
test/test_files/all_validations_prot/prot.fa1006440018.1 KBd2a346e76a4933a36dd3370706562c99c0cb2678afb9a672a8c24d892755106e
test/test_files/all_validations_prot/prot.raw_seq100644001.31 MB2dad5c978e795e897411a2e762c36ffe9f9b94f033ef2a86887ada301bbf0873
test/test_files/all_validations_prot/prot.raw_seq.idx1006440065.4 KBf3d073d553fcbf6d852b1f27823035b4be2a9f89fa32db16a0ce067047139ef4
test/test_files/mixed_type.fasta100644001.75 KB17a5cabe9950033916a5beed4663abfc808b3e3839c66ddf0fdc4d63e755edeb
test/test_files/ncbi_mrna.tab.20100644001.47 KBd7c2b9763691e11952345f1fbd4ddb1a692e23329304f93b47e4bf526b44c3c3
test/test_files/ncbi_mrna.xml.201006440026.7 KBc6d616b36efa6f3e580351d001e85cf229d55b04013352687b80922fe3bb8b89
test/test_files/output.tab.610064400773 Bytes487cbc5a7d24f5286fedee8dea655a40fd25c32387da09d7a99aeda3853e97bb
test/test_files/output.tab.6.mixed10064400774 Bytes8bea242d2167fa260155ff87cb50efa49e2af515d890411346022817c7cb8a15
test/test_files/output.tab.710064400513 Bytes5d0cef9afe68efc12dcb7dfd3b75b935dc5c7d84f2f2802f20812134a03d2de3
test/test_files/output.xml10064400886 KBd48f5f3799ec687bcc1afac4304f070f312818fb58769680b847ed6a5a02c005
test/test_files/test_sequences.fasta100644004.13 KB5efc8356081153ab4a6dd2b988eb0e5e6634b1b0aa1b1339733719b67858389c
test/test_files/test_sequences.fasta.blast_xml100644003.59 MB211f6de799e70f6d5634145179990bf88fbc413944f1d18f58de02804f9d5bc7
test/test_files/test_sequences.fasta.blast_xml.index1006440029.4 KBe45172d03e9e9ac9d6cbb5b3a784a7488a7c2fe4d57e93c84963c0c8b9f5f87e
test/test_files/test_sequences.fasta.blast_xml.raw_seq10064400902 KB36035495b0225020528e2d98fe685a2dcc7a5d29c1323dbc3a8279aca1d9be0a
test/test_files/test_sequences.fasta.blast_xml.raw_seq.idx1006440065.4 KBae37fabe1d6bac151e09a5bfbfb96ca5e9e9885ab81ac5cb7e09db23382c5914
test/test_files/test_validations.fasta100644004.47 KB872d7f0bfb9ca48b24474f39cf367c33eb505ae1e7c7aae61642b1fa11400ca6
test/test_helper.rb1006440036 Bytes82c5da8f20d0429fa90ef3649b00156ec50c95812a2ae1d372f18757f85b53f9
test/test_query.rb100644002.89 KB9d17df231665dfecabc1bb68819389569ea59174dd964e100ea344664c8f890c
test/test_validation_open_reading_frame.rb1006440021.6 KB15f74c7e389203389c10e9e94ab17695545a65bccd57b5a14623f645ec61c924
test/test_validations.rb1006440018 KBbd58deaa6d2a016d823feb8e188b1e1dc5d40013bfb1d622483db855048c8310