# -*- encoding: utf-8 -*- # stub: genevalidator 1.6.0 ruby lib Gem::Specification.new do |s| s.name = "genevalidator".freeze s.version = "1.6.0".freeze s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version= s.require_paths = ["lib".freeze] s.authors = ["Monica Dragan".freeze, "Ismail Moghul".freeze, "Anurag Priyam".freeze, "Yannick Wurm".freeze] s.date = "2015-05-28" s.description = "The tool validates the input predicted genes and provides useful information (length validation, gene merge validation, sequence duplication checking, ORF finding) based on the similarities to genes in public databases.\n".freeze s.email = "y.wurm@qmul.ac.uk".freeze s.executables = ["genevalidator".freeze] s.files = [".gitignore".freeze, ".travis.yml".freeze, "Gemfile".freeze, "GeneValidator.gemspec".freeze, "LICENCE.txt".freeze, "README.md".freeze, "Rakefile".freeze, "aux/app_template_footer.erb".freeze, "aux/app_template_header.erb".freeze, "aux/files/css/bootstrap.min.css".freeze, "aux/files/css/font-awesome.min.css".freeze, "aux/files/css/style.css".freeze, "aux/files/fonts/FontAwesome.otf".freeze, "aux/files/fonts/fontawesome-webfont.eot".freeze, "aux/files/fonts/fontawesome-webfont.svg".freeze, "aux/files/fonts/fontawesome-webfont.ttf".freeze, "aux/files/fonts/fontawesome-webfont.woff".freeze, "aux/files/img/gene.png".freeze, "aux/files/js/bootstrap.min.js".freeze, "aux/files/js/d3.v3.min.js".freeze, "aux/files/js/jquery-2.1.1.min.js".freeze, "aux/files/js/jquery.tablesorter.min.js".freeze, "aux/files/js/plots.js".freeze, "aux/files/js/script.js".freeze, "aux/files/json/.gitkeep".freeze, "aux/template_footer.erb".freeze, "aux/template_header.erb".freeze, "aux/template_query.erb".freeze, "bin/genevalidator".freeze, "data/README.md".freeze, "data/mrna_data.fasta".freeze, "data/mrna_data.fasta.blast_tabular".freeze, "data/mrna_data.fasta.blast_xml".freeze, "data/protein_data.fasta".freeze, "data/protein_data.fasta.blast_tabular".freeze, "data/protein_data.fasta.blast_xml".freeze, "doc/AliasDuplicationError.html".freeze, "doc/AlignmentValidation.html".freeze, "doc/AlignmentValidationOutput.html".freeze, "doc/Blast.html".freeze, "doc/BlastRFValidationOutput.html".freeze, "doc/BlastReadingFrameValidation.html".freeze, "doc/BlastUtils.html".freeze, "doc/ClasspathError.html".freeze, "doc/Cluster.html".freeze, "doc/DuplciationValidationOutput.html".freeze, "doc/DuplicationValidation.html".freeze, "doc/DuplicationValidationOutput.html".freeze, "doc/FileNotFoundException.html".freeze, "doc/GeneMergeValidation.html".freeze, "doc/GeneMergeValidationOutput.html".freeze, "doc/HierarchicalClusterization.html".freeze, "doc/Hsp.html".freeze, "doc/InconsistentTabularFormat.html".freeze, "doc/LengthClusterValidation.html".freeze, "doc/LengthClusterValidationOutput.html".freeze, "doc/LengthRankValidation.html".freeze, "doc/LengthRankValidationOutput.html".freeze, "doc/NoInternetError.html".freeze, "doc/NoMafftInstallationError.html".freeze, "doc/NoPIdentError.html".freeze, "doc/NoValidationError.html".freeze, "doc/NotEnoughHitsError.html".freeze, "doc/ORFValidationOutput.html".freeze, "doc/OpenReadingFrameValidation.html".freeze, "doc/OtherError.html".freeze, "doc/Output.html".freeze, "doc/Pair.html".freeze, "doc/PairCluster.html".freeze, "doc/Plot.html".freeze, "doc/QueryError.html".freeze, "doc/ReportClassError.html".freeze, "doc/Sequence.html".freeze, "doc/SequenceTypeError.html".freeze, "doc/TabularEntry.html".freeze, "doc/TabularParser.html".freeze, "doc/Validation.html".freeze, "doc/ValidationClassError.html".freeze, "doc/ValidationOutput.html".freeze, "doc/ValidationReport.html".freeze, "doc/ValidationTest.html".freeze, "doc/_index.html".freeze, "doc/class_list.html".freeze, "doc/css/common.css".freeze, "doc/css/full_list.css".freeze, "doc/css/style.css".freeze, "doc/file.README.html".freeze, "doc/file_list.html".freeze, "doc/frames.html".freeze, "doc/index.html".freeze, "doc/js/app.js".freeze, "doc/js/full_list.js".freeze, "doc/js/jquery.js".freeze, "doc/method_list.html".freeze, "doc/top-level-namespace.html".freeze, "lib/genevalidator.rb".freeze, "lib/genevalidator/arg_validation.rb".freeze, "lib/genevalidator/blast.rb".freeze, "lib/genevalidator/clusterization.rb".freeze, "lib/genevalidator/exceptions.rb".freeze, "lib/genevalidator/ext/array.rb".freeze, "lib/genevalidator/get_raw_sequences.rb".freeze, "lib/genevalidator/hsp.rb".freeze, "lib/genevalidator/output.rb".freeze, "lib/genevalidator/pool.rb".freeze, "lib/genevalidator/sequences.rb".freeze, "lib/genevalidator/tabular_parser.rb".freeze, "lib/genevalidator/validation_alignment.rb".freeze, "lib/genevalidator/validation_blast_reading_frame.rb".freeze, "lib/genevalidator/validation_duplication.rb".freeze, "lib/genevalidator/validation_gene_merge.rb".freeze, "lib/genevalidator/validation_length_cluster.rb".freeze, "lib/genevalidator/validation_length_rank.rb".freeze, "lib/genevalidator/validation_open_reading_frame.rb".freeze, "lib/genevalidator/validation_report.rb".freeze, "lib/genevalidator/validation_test.rb".freeze, "lib/genevalidator/version.rb".freeze, "test/Readme.md".freeze, "test/test_all_validations.rb".freeze, "test/test_blast.rb".freeze, "test/test_clusterization.rb".freeze, "test/test_clusterization_2d.rb".freeze, "test/test_extended_array_methods.rb".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.index".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq.idx".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.index".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq.idx".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml.index".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml.raw_seq".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml.raw_seq.idx".freeze, "test/test_files/mixed_type.fasta".freeze, "test/test_files/ncbi_mrna.tab.20".freeze, "test/test_files/ncbi_mrna.xml.20".freeze, "test/test_files/output.tab.6".freeze, "test/test_files/output.tab.6.mixed".freeze, "test/test_files/output.tab.7".freeze, "test/test_files/output.xml".freeze, "test/test_files/test_sequences.fasta".freeze, "test/test_files/test_sequences.fasta.blast_xml".freeze, "test/test_files/test_sequences.fasta.blast_xml.index".freeze, "test/test_files/test_sequences.fasta.blast_xml.raw_seq".freeze, "test/test_files/test_sequences.fasta.blast_xml.raw_seq.idx".freeze, "test/test_files/test_validations.fasta".freeze, "test/test_helper.rb".freeze, "test/test_sequences.rb".freeze, "test/test_validation_open_reading_frame.rb".freeze, "test/test_validations.rb".freeze] s.homepage = "https://github.com/wurmlab/GeneValidator".freeze s.licenses = ["AGPL".freeze] s.post_install_message = "\n------------------------------------------------------------------------\n Thank you for validating your gene predictions with GeneValidator!\n\n To launch GeneValidator execute 'genevalidator' from command line.\n\n $ genevalidator [options] FASTA_FILE\n\n Visit https://github.com/wurmlab/GeneValidator for more information.\n------------------------------------------------------------------------\n\n".freeze s.required_ruby_version = Gem::Requirement.new(">= 2.0.0".freeze) s.rubygems_version = "3.5.10".freeze s.summary = "Identifying problems with gene predictions.".freeze s.test_files = ["test/Readme.md".freeze, "test/test_all_validations.rb".freeze, "test/test_blast.rb".freeze, "test/test_clusterization.rb".freeze, "test/test_clusterization_2d.rb".freeze, "test/test_extended_array_methods.rb".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.index".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_tab.raw_seq.idx".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.index".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq".freeze, "test/test_files/all_validations_mrna/all_validations_mrna.fasta.blast_xml.raw_seq.idx".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.index".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_tab.raw_seq.idx".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml.index".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml.raw_seq".freeze, "test/test_files/all_validations_prot/all_validations_prot.fasta.blast_xml.raw_seq.idx".freeze, "test/test_files/mixed_type.fasta".freeze, "test/test_files/ncbi_mrna.tab.20".freeze, "test/test_files/ncbi_mrna.xml.20".freeze, "test/test_files/output.tab.6".freeze, "test/test_files/output.tab.6.mixed".freeze, "test/test_files/output.tab.7".freeze, "test/test_files/output.xml".freeze, "test/test_files/test_sequences.fasta".freeze, "test/test_files/test_sequences.fasta.blast_xml".freeze, "test/test_files/test_sequences.fasta.blast_xml.index".freeze, "test/test_files/test_sequences.fasta.blast_xml.raw_seq".freeze, "test/test_files/test_sequences.fasta.blast_xml.raw_seq.idx".freeze, "test/test_files/test_validations.fasta".freeze, "test/test_helper.rb".freeze, "test/test_sequences.rb".freeze, "test/test_validation_open_reading_frame.rb".freeze, "test/test_validations.rb".freeze] s.specification_version = 4 s.add_development_dependency(%q.freeze, ["~> 1.6".freeze]) s.add_development_dependency(%q.freeze, ["~> 10.3".freeze]) s.add_runtime_dependency(%q.freeze, ["~> 1.4".freeze]) s.add_runtime_dependency(%q.freeze, ["~> 2.0".freeze]) s.add_runtime_dependency(%q.freeze, ["~> 5.4".freeze]) s.add_runtime_dependency(%q.freeze, ["~> 1.4".freeze]) end