# -*- encoding: utf-8 -*-
# stub: mspire 0.7.13 ruby lib

Gem::Specification.new do |s|
  s.name = "mspire".freeze
  s.version = "0.7.13".freeze

  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["John T. Prince".freeze, "Simon Chiang".freeze]
  s.date = "2012-07-10"
  s.description = "mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms-* gems".freeze
  s.email = "jtprince@gmail.com".freeze
  s.executables = ["mzml_to_imzml".freeze]
  s.extra_rdoc_files = ["LICENSE".freeze, "README.rdoc".freeze]
  s.files = ["LICENSE".freeze, "README.rdoc".freeze, "Rakefile".freeze, "VERSION".freeze, "bin/mzml_to_imzml".freeze, "lib/core_ext/array/in_groups.rb".freeze, "lib/cv.rb".freeze, "lib/cv/param.rb".freeze, "lib/cv/referenceable_param_group_ref.rb".freeze, "lib/io/bookmark.rb".freeze, "lib/merge.rb".freeze, "lib/mspire.rb".freeze, "lib/mspire/bin.rb".freeze, "lib/mspire/cv/obo.rb".freeze, "lib/mspire/cv/param.rb".freeze, "lib/mspire/cv/paramable.rb".freeze, "lib/mspire/digester.rb".freeze, "lib/mspire/error_rate/decoy.rb".freeze, "lib/mspire/error_rate/qvalue.rb".freeze, "lib/mspire/fasta.rb".freeze, "lib/mspire/ident.rb".freeze, "lib/mspire/ident/peptide.rb".freeze, "lib/mspire/ident/peptide/db.rb".freeze, "lib/mspire/ident/peptide_hit.rb".freeze, "lib/mspire/ident/peptide_hit/qvalue.rb".freeze, "lib/mspire/ident/pepxml.rb".freeze, "lib/mspire/ident/pepxml/modifications.rb".freeze, "lib/mspire/ident/pepxml/msms_pipeline_analysis.rb".freeze, "lib/mspire/ident/pepxml/msms_run_summary.rb".freeze, "lib/mspire/ident/pepxml/parameters.rb".freeze, "lib/mspire/ident/pepxml/sample_enzyme.rb".freeze, "lib/mspire/ident/pepxml/search_database.rb".freeze, "lib/mspire/ident/pepxml/search_hit.rb".freeze, "lib/mspire/ident/pepxml/search_hit/modification_info.rb".freeze, "lib/mspire/ident/pepxml/search_result.rb".freeze, "lib/mspire/ident/pepxml/search_summary.rb".freeze, "lib/mspire/ident/pepxml/spectrum_query.rb".freeze, "lib/mspire/ident/protein.rb".freeze, "lib/mspire/ident/protein_group.rb".freeze, "lib/mspire/ident/search.rb".freeze, "lib/mspire/imzml/writer.rb".freeze, "lib/mspire/imzml/writer/commandline.rb".freeze, "lib/mspire/isotope.rb".freeze, "lib/mspire/isotope/aa.rb".freeze, "lib/mspire/isotope/distribution.rb".freeze, "lib/mspire/isotope/nist_isotope_info.yml".freeze, "lib/mspire/mascot.rb".freeze, "lib/mspire/mass.rb".freeze, "lib/mspire/mass/aa.rb".freeze, "lib/mspire/molecular_formula.rb".freeze, "lib/mspire/mzml.rb".freeze, "lib/mspire/mzml/activation.rb".freeze, "lib/mspire/mzml/chromatogram.rb".freeze, "lib/mspire/mzml/chromatogram_list.rb".freeze, "lib/mspire/mzml/component.rb".freeze, "lib/mspire/mzml/contact.rb".freeze, "lib/mspire/mzml/cv.rb".freeze, "lib/mspire/mzml/data_array.rb".freeze, "lib/mspire/mzml/data_array_container_like.rb".freeze, "lib/mspire/mzml/data_processing.rb".freeze, "lib/mspire/mzml/file_content.rb".freeze, "lib/mspire/mzml/file_description.rb".freeze, "lib/mspire/mzml/index_list.rb".freeze, "lib/mspire/mzml/instrument_configuration.rb".freeze, "lib/mspire/mzml/isolation_window.rb".freeze, "lib/mspire/mzml/list.rb".freeze, "lib/mspire/mzml/plms1.rb".freeze, "lib/mspire/mzml/precursor.rb".freeze, "lib/mspire/mzml/processing_method.rb".freeze, "lib/mspire/mzml/product.rb".freeze, "lib/mspire/mzml/referenceable_param_group.rb".freeze, "lib/mspire/mzml/run.rb".freeze, "lib/mspire/mzml/sample.rb".freeze, "lib/mspire/mzml/scan.rb".freeze, "lib/mspire/mzml/scan_list.rb".freeze, "lib/mspire/mzml/scan_settings.rb".freeze, "lib/mspire/mzml/scan_window.rb".freeze, "lib/mspire/mzml/selected_ion.rb".freeze, "lib/mspire/mzml/software.rb".freeze, "lib/mspire/mzml/source_file.rb".freeze, "lib/mspire/mzml/spectrum.rb".freeze, "lib/mspire/mzml/spectrum_list.rb".freeze, "lib/mspire/obo.rb".freeze, "lib/mspire/peak.rb".freeze, "lib/mspire/peaklist.rb".freeze, "lib/mspire/plms1.rb".freeze, "lib/mspire/quant/qspec.rb".freeze, "lib/mspire/quant/qspec/protein_group_comparison.rb".freeze, "lib/mspire/spectrum.rb".freeze, "lib/mspire/spectrum/centroid.rb".freeze, "lib/mspire/spectrum_like.rb".freeze, "lib/mspire/tagged_peak.rb".freeze, "lib/mspire/user_param.rb".freeze, "lib/obo/ims.rb".freeze, "lib/obo/ms.rb".freeze, "lib/obo/ontology.rb".freeze, "lib/obo/unit.rb".freeze, "lib/openany.rb".freeze, "lib/write_file_or_string.rb".freeze, "obo/ims.obo".freeze, "obo/ms.obo".freeze, "obo/unit.obo".freeze, "script/download_uniprotkb_db.rb".freeze, "script/mzml_read_binary.rb".freeze, "script/quant_compare_direct_injections.rb".freeze, "spec/cv/param_spec.rb".freeze, "spec/mspire/bin_spec.rb".freeze, "spec/mspire/cv/obo_spec.rb".freeze, "spec/mspire/cv/param_spec.rb".freeze, "spec/mspire/cv/paramable_spec.rb".freeze, "spec/mspire/digester_spec.rb".freeze, "spec/mspire/error_rate/qvalue_spec.rb".freeze, "spec/mspire/fasta_spec.rb".freeze, "spec/mspire/ident/peptide/db_spec.rb".freeze, "spec/mspire/ident/pepxml/sample_enzyme_spec.rb".freeze, "spec/mspire/ident/pepxml/search_hit/modification_info_spec.rb".freeze, "spec/mspire/ident/pepxml_spec.rb".freeze, "spec/mspire/ident/protein_group_spec.rb".freeze, "spec/mspire/imzml/writer_spec.rb".freeze, "spec/mspire/isotope/aa_spec.rb".freeze, "spec/mspire/isotope/distribution_spec.rb".freeze, "spec/mspire/isotope_spec.rb".freeze, "spec/mspire/mass_spec.rb".freeze, "spec/mspire/molecular_formula_spec.rb".freeze, "spec/mspire/mzml/cv_spec.rb".freeze, "spec/mspire/mzml/data_array_spec.rb".freeze, "spec/mspire/mzml/file_content_spec.rb".freeze, "spec/mspire/mzml/file_description_spec.rb".freeze, "spec/mspire/mzml/index_list_spec.rb".freeze, "spec/mspire/mzml/plms1_spec.rb".freeze, "spec/mspire/mzml/referenceable_param_group_spec.rb".freeze, "spec/mspire/mzml/source_file_spec.rb".freeze, "spec/mspire/mzml/spectrum_spec.rb".freeze, "spec/mspire/mzml_spec.rb".freeze, "spec/mspire/peak_list_spec.rb".freeze, "spec/mspire/plms1_spec.rb".freeze, "spec/mspire/quant/qspec_spec.rb".freeze, "spec/mspire/spectrum_spec.rb".freeze, "spec/mspire/user_param_spec.rb".freeze, "spec/mspire_spec.rb".freeze, "spec/obo_spec.rb".freeze, "spec/spec_helper.rb".freeze, "spec/testfiles/continuous_binary.tmp.ibd".freeze, "spec/testfiles/mspire/ident/peptide/db/uni_11_sp_tr.fasta".freeze, "spec/testfiles/mspire/ident/peptide/db/uni_11_sp_tr.msd_clvg2.min_aaseq4.yml".freeze, "spec/testfiles/mspire/imzml/continuous_binary_check.ibd".freeze, "spec/testfiles/mspire/imzml/processed_binary_check.ibd".freeze, "spec/testfiles/mspire/mzml/j24z.idx_comp.3.mzML".freeze, "spec/testfiles/mspire/mzml/mspire_simulated.MSn.check.mzML".freeze, "spec/testfiles/mspire/mzml/openms.noidx_nocomp.12.mzML".freeze, "spec/testfiles/mspire/quant/kill_extra_tabs.rb".freeze, "spec/testfiles/mspire/quant/max_quant_output.provenance.txt".freeze, "spec/testfiles/mspire/quant/max_quant_output.txt".freeze, "spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv".freeze, "spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp".freeze, "spec/testfiles/mspire/quant/pdcd5_final.killedextratabs.tsv_qspecgp.csv".freeze, "spec/testfiles/mspire/quant/pdcd5_final.txt".freeze, "spec/testfiles/mspire/quant/pdcd5_final.txt_qspecgp".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.CSV.csv".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.csv".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.csv".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp.csv".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_qspec.txt".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_tabdel.txt".freeze, "spec/testfiles/mspire/quant/pdcd5_lfq_tabdel.txt_qspecgp".freeze, "spec/testfiles/mspire/quant/remove_rest_of_proteins.rb".freeze, "spec/testfiles/mspire/quant/unlog_transform.rb".freeze, "spec/testfiles/plms1/output.key".freeze, "spec/testfiles/processed_binary.tmp.ibd".freeze]
  s.homepage = "http://github.com/princelab/mspire".freeze
  s.licenses = ["MIT".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "mass spectrometry proteomics, lipidomics, and tools".freeze

  s.specification_version = 3

  s.add_runtime_dependency(%q<nokogiri>.freeze, ["~> 1.5".freeze])
  s.add_runtime_dependency(%q<bsearch>.freeze, [">= 1.5.0".freeze])
  s.add_runtime_dependency(%q<andand>.freeze, [">= 1.3.1".freeze])
  s.add_runtime_dependency(%q<obo>.freeze, [">= 0.1.0".freeze])
  s.add_runtime_dependency(%q<builder>.freeze, ["~> 3.0.0".freeze])
  s.add_runtime_dependency(%q<bio>.freeze, ["~> 1.4.2".freeze])
  s.add_runtime_dependency(%q<trollop>.freeze, ["~> 1.16.2".freeze])
  s.add_runtime_dependency(%q<uuid>.freeze, [">= 2.3.5".freeze])
  s.add_development_dependency(%q<fftw3>.freeze, ["~> 0.3".freeze])
  s.add_development_dependency(%q<rspec>.freeze, ["~> 2.6".freeze])
  s.add_development_dependency(%q<jeweler>.freeze, ["~> 1.5.2".freeze])
end