mspire-0.4.4

https://rubygems.org

id: 37306

number: 0.4.4

platform: ruby

spec_sha256: 472cd31f4b8923e8f4593a1ee891979cc5eeffdfef972636e1da7d2339e911ad

sha256: ebfca1b56af2f6835f7f8d9444111ada04407d4d5f16a6859771f7341b68f20b

created_at: 2024-05-13 08:14:16 UTC

updated_at: 2024-05-29 23:44:39 UTC

position: 60

version_data_entries_count: 246

uploaded_at: 2009-07-25 18:06:17 UTC

indexed: true

has_extensions:

extensions:

Gem size: 2.99 MB

Version Data Entries

Total: 246

Unpacked size: 8.88 MB

Full Name	Mode	Size	SHA
INSTALL	644	2.19 KB	43b95ff1d35da56d18f209dba1c769807cb3105566522c37ba070abad8b60b15
lib/ms/spectrum.rb	644	11.2 KB	d8e0ff2a9e3c4ca9a036c7321fa1cf355dde1131c1de3feff8a324d0c7843acd
README	644	2.18 KB	f500886303c7071f62a2c8407ce1188856870e834a40e8c8a17ef164ed04e32f
README.rdoc	644	579 Bytes	29c75685e1d3cdd157ed43b6a6918c908711f5e71e21c216cc7e07110ac4520e
Rakefile	644	8.99 KB	17bc18014cc6eb6722b2c04773eb65e86ac5628634f0c543657e49a4ba66ae7a
LICENSE	644	1.74 KB	49ec5bb405e973c72366fcfb3ab81f4afc5fe4f0c4664420840528d79f545666
changelog.txt	644	6.37 KB	d96f78290f44ff8be55b95413b3adb324b9fbe2a33b43afb087f27779c7531e4
release_notes.txt	644	2 Bytes	75a11da44c802486bc6f65640aa48a730f0f684c5c07a42ba3cd1735eb3fb070
lib/ms/parser/mzxml/rexml.rb	644	1.3 KB	ca1b2f468cf77822fa4fd19bccf1d7418335b89ab91e951fd78b071268910a60
lib/ms/parser/mzxml/libxml.rb	644	342 Bytes	0ed90ef50ab8f917c01459489f76f96442868ec78928f8a51f31aa0ff3cee939
lib/ms/parser/mzxml/xmlparser.rb	644	5.22 KB	4c12bece5ebcdd479d4a5a6784652144f1dce2be94a4ebb5c7ee4dc505f95660
lib/ms/parser/mzxml/regexp.rb	644	2.93 KB	fb6064289372f025176e40529f0090d13938c9b3acdd9ab534da4ea8c9791d70
lib/ms/parser/mzxml/axml.rb	644	1.65 KB	b6a48ec2075c4c1cf68641d70c6d3b54bcde30f8137006bc91b579e36c4b5c8b
lib/ms/parser/mzxml/hpricot.rb	644	6.87 KB	ecd32a2345ed67b463593fe8671bdc0c1aa8e5c258c6558fe7101d84e9a59525
lib/ms/parser/mzxml/dom.rb	644	5.22 KB	6a5284c83c55ec6be81d9a80a9602b2989fafca41b295a6f8ceb9f171abd11b7
lib/ms/parser/mzdata.rb	644	792 Bytes	8d82c59a7357dcc69f031648df831417c6add8f6883384343c6bfcb3d9ea69a2
lib/ms/parser/mzxml.rb	644	8.08 KB	eff0c2c014972a4b5bda315501bcb9caa55b8d85be10e121567c64285dc265bc
lib/ms/msrun.rb	644	7.17 KB	5f0ad68313606d9e668e71ebe9383f5ac0012f7ee3553a00e223c624caf4b742
lib/ms/gradient_program.rb	644	5.82 KB	f2cac38e847fb9b8b790f0e65874ab1d506e04b77740d53c16cceb98444e02ac
lib/ms/msrun_index.rb	644	2.9 KB	aa0587b0bdb2130cb1ac9d7c6153a643d1f0ffe00be153417f822d4112cdd336
lib/ms/parser.rb	644	3.1 KB	f58d99ada325aabf5ab370de8dc69491501575b0a51f00302ca0b94e9630a95e
lib/ms/converter/mzxml.rb	644	2.11 KB	0774f0a98be52bb9b434ed65cd68203c87a498a96110a78725e8e75f6960bcab
lib/ms/scan.rb	644	2.11 KB	4542f284059461f83a1d7f242ccfd2a46844a8db596fb8b6fa543edfb8c809c1
lib/core_extensions.rb	644	302 Bytes	d3ea64e737bf9ddb1371c469c2b8622ad4fb6d35586c89b32631d94f73c835fc
lib/scan_i.rb	644	367 Bytes	baa675e6ae1c424ce17f8ab518147578771f0b5d80be5e3dd0146355c075c567
lib/fasta.rb	644	16.1 KB	c31edd25d0dac428e9136289f7ea1bcb375a7d65c8108a3884229e17bcb7a663
lib/qvalue.rb	644	4.77 KB	66254ab18158036777ef8a91fbcbb8e28fcdcf2d024d2dbf99f198f7c7654019
lib/xml.rb	644	949 Bytes	48fc387fec64a61c02cbcad75523cce096907ced8bc2dc33cbd44e6cc6a9c001
lib/group_by.rb	644	189 Bytes	806d63e53dbb741c339c21d9d17a81dda580f10babc1b01a3d0e223636e3920d
lib/index_by.rb	644	172 Bytes	a1936c02421b45c057db3848892f1d5476145ca1fc84df285e32e4c09fddc82e
lib/sample_enzyme.rb	644	4.18 KB	e774386f586f58d01c5201d99a10eb06f2339eca1b86c62e1c04a99a5f58af42
lib/transmem/phobius.rb	644	3.34 KB	3c025422cb97abdd3605c08b26f806f7a58cd0ffd7eb5880ab88518fcbafe010
lib/transmem/toppred.rb	644	10.2 KB	28a78b243cdba484856aebd9080d781889e3d1d90a9ab4be200cc3664ec11b6a
lib/ms.rb	644	80 Bytes	f236699d350adf426e9a2dea587b26c9dbe93e942defe2dc51e74619cbaa27c2
lib/pi_zero.rb	644	7.4 KB	96934c7fb4e242b6274bd1addaa8b1285553d280ced1d91139d88db4aa3af982
lib/spec_id/srf.rb	644	29.2 KB	5f0d0d5874ceb7aa2e2de6dbe35d2f3667d7f1acc421228cb9724bd23ce2c006
lib/spec_id/sequest.rb	644	1.12 KB	ae6c8dbe5732087effcda69117447114b54cf8ed134f48779ed2c83778f0b27e
lib/spec_id/parser/proph.rb	644	11.4 KB	287e39655a468106cf567cd52717b9298b97f68eecd12c719f5218ef168fd81e
lib/spec_id/sequest/params.rb	644	8.4 KB	76c4137fe328e64354f14aed6681956811b4ca2e5afaec555a76cc9692fa9eb7
lib/spec_id/precision/filter.rb	644	21.2 KB	80ea22a958983874bcc4a3c5417feba7b659c5550f7d0b6595cb2b0726b85ce9
lib/spec_id/precision/prob.rb	644	7.71 KB	39d81e2ca2d414acaee1e448067c022b63df64a3e4a9183194dcbf7508343102
lib/spec_id/precision/output.rb	644	1.25 KB	7a97c5cfae63b6ae888b66c5591d80b22cd58292938a09223390a785b7ff31ec
lib/spec_id/precision/filter/interactive.rb	644	3.89 KB	1287ecc8857c67148a1f150ed79757fb38c01d51f2dba43bdb8b7a6675869b32
lib/spec_id/precision/filter/cmdline.rb	644	9.65 KB	3467edede3966cf654ee41b13e1d1345a9aca4ca3874649316fc1087fe448deb
lib/spec_id/precision/prob/cmdline.rb	644	6.3 KB	65b335f11187018141b58402e85c7bfc753adb7a03b87978ad833fde5ae7a140
lib/spec_id/precision/prob/output.rb	644	2.53 KB	0583879dc1864bcd4b4a9a932118ec6e565b54871990a8b3f1ab0e58f7fe7dbd
lib/spec_id/mass.rb	644	4.72 KB	f08b2a5d512312d94d644f85956a1ea0b029d41681086840ea239089f50c8a28
lib/spec_id/proph/pep_summary.rb	644	2.32 KB	b8a0e032c69a87c305142197407640b467050bb2074edc9acd1f85e766eb04bd
lib/spec_id/proph/prot_summary.rb	644	14.3 KB	7802f8c1670b40500fd93ecd7b54f341b286fa430eff9a1a40b3aec13775302b
lib/spec_id/protein_summary.rb	644	15.8 KB	ac38265711b6e6cf77094b4a9a8a1971b744560dbb4d9ecd42499cb8b8424876
lib/spec_id/proph.rb	644	77 Bytes	620225cafb940ccf095b8ddf60dc1da39fe25ff4c1500f3e22d538a3188a24b4
lib/spec_id/digestor.rb	644	4.96 KB	7bcbd9ae9736c0f94a3179542d4776424d13877874717b5ecc9f0858a0227c98
lib/spec_id/sqt.rb	644	9.03 KB	9b8f54c92673c355a30943a2f3c86199e17a3f430fa3a63134b158f0a53b311d
lib/spec_id/bioworks.rb	644	14.4 KB	dee09bfa5299820bd6a06719c24f47ec2bf9c1fd50ca317a01d0f28389dae2c5
lib/xmlparser_wrapper.rb	644	501 Bytes	f47d9327035a1110f4bdb158a5178f9e86279045bc26d62b6e3bdb29e839f55f
lib/transmem.rb	644	4.77 KB	147ce2216b5b0b5b31a16de07943fcb6d2d9114cc36d629b2b2ab4d4ea25e0d0
lib/align/chams.rb	644	1.95 KB	c373053e0fee5e649d8e64657ff0950e72e7ce7bd52b39c590fd69080102a499
lib/validator.rb	644	6.14 KB	22bd5cc90380d617bbf4d6eb6f4a8a0f8a7b0edb9a9a4d75777ab3c6b20f7142
lib/gi.rb	644	3.15 KB	6ffcf981c902d3cf698fca6a92a8da4562fe667b2dfd279eba37cd74d87352a2
lib/validator/prot_from_pep.rb	644	9 KB	d7005a5d6ba9a0f97146e65cdceff3cb47bb16a5192f68bbd3cf6f5fd5bec14d
lib/validator/aa.rb	644	1.57 KB	195cd554aea5e9bf29a2bd485da583dee626642f4b3071cbd5f6fefbd6343bf9
lib/validator/decoy.rb	644	2.72 KB	5b06826c98b9ec68bed8ca510d3c4b97ec0edae3d45a8461c173302de406f7ab
lib/validator/true_pos.rb	644	1.15 KB	46cc36d4036111fd6311f9cb2c9571df5a05373119978ffffb24793169e243ff
lib/validator/probability.rb	644	1.36 KB	a7bfbc2c0ef88fe5eef9f3f6af9ff1ede46eb7d5506b8bf1e3151594a3573300
lib/validator/cmdline.rb	644	17.5 KB	f750ee4f8fba7dc5ce2c8c57dbe932bf577edc9e074c519a6ada35b63b8ee7cd
lib/validator/digestion_based.rb	644	2.31 KB	b3529ceb8972e01b7f614610d749145aade0094fc3332e4fa7581546f0763553
lib/validator/background.rb	644	1.92 KB	e4564a38db31686d7e3a352fe079b4bafe3d59292f5631bbd1ef0ea512055c84
lib/validator/q_value.rb	644	993 Bytes	cba6e733d46ea8c788ae74fc4af2beb21667327cdab756a56b8df7a8797cdd32
lib/xml_style_parser.rb	644	3.55 KB	296ff9c6a29d42f1a9d350a9ceb159d4aa90b3ba31796db87c32769f49b9dd8b
lib/mspire.rb	644	39 Bytes	90433c228eb0961572d09a474adb26d3d3f191c8727e2000ef28e11454627855
lib/bsearch.rb	644	3.14 KB	5ecfcf476f29c902b7e142e564845ad145da2183684627bfb03a505284dc75fa
bin/gi2annot.rb	755	216 Bytes	9d3ec4d3a35ebb9ec4c113ac83becb2c5e11d488954fb2cace467b74e1d65164
bin/protxml2prots_peps.rb	755	773 Bytes	7a32b263193a3f5b8926930e25ad98d0830fa466888dd4252559530a47825cf9
bin/run_percolator.rb	644	3.98 KB	206b2de485e9477a25edb6082f13c9d1ccd574bcb879d37c86cf5537cc601860
bin/srf_to_sqt.rb	644	1.52 KB	43a32ec1b18a3c41e9fd04d63158344917949b5f94cf0eb4563f83285cc63a1d
bin/prob_validate.rb	644	116 Bytes	8add5bc58593faccec098098ef2fc1a21c27c4e86b9ccaa76a2cd12a3471f55c
bin/srf_group.rb	755	608 Bytes	61553508cfcdb8cb1c2e9276958835d03888d4336ced4baa6db1758effae9569
bin/ms_to_lmat.rb	755	1.63 KB	522e834de5aa25967a9d4a228539e4564a8359366a7f0965f2a3dbc790ca4792
bin/id_class_anal.rb	755	2.92 KB	d268574c18d9e1f39152753bd57a0252fae62bd33a344a2bf6ae7a8ecd4b1273
bin/id_precision.rb	755	4.08 KB	08faf0ae9c9fe0ebde230cf985696209e7ea28519f34ac10d17a04419664e9e5
bin/sqt_group.rb	755	607 Bytes	a77c19126ffcfb8246a416b83f05be127065da3fa0df8c8436868187535e2a28
bin/aafreqs.rb	755	407 Bytes	72f9966835dafc1f87a99574e0025f142014656cf52ca50a40d20b9f695bb04c
bin/pepproph_filter.rb	755	478 Bytes	88f071310479f70c3e4e5580f10efadb56a70a54b0675110e66047d9a12cd2d3
bin/bioworks_to_pepxml.rb	755	5.06 KB	5427b817aefe57535b2a4fc3771dbb8583a580c5a8760338949a183f5a37e2d8
bin/fasta_shaker.rb	755	68 Bytes	f900ec32a8d691a49e2b059f85ae1a0bcae3475c5923dc3accd47bcea4af88d6
script/estimate_fpr_by_cysteine.rb	755	6 KB	566b5cf081369fbdbba3c306e288dc6d5600f9b74060aa638352fe50ae860a3c
script/toppred_to_yaml.rb	755	1.3 KB	a5e5113933660c74d726d531f995f99b09fb17d4807c23803099b4f0488978e9
script/extract_gradient_programs.rb	755	1.18 KB	7b4a711597e9276498bd24a1ef91f210f661cb3405c1636aaf302fdc29872f96
script/mzXML2timeIndex.rb	755	601 Bytes	57eff7efa0696e17a6556394f94cb37da4c019a77b86db878b358010b5f6b3c8
script/genuine_tps_and_probs.rb	755	3.32 KB	87a6cd09ee3ad395929c3024d14a0222ebc5495b2965ad50a83717aed05a1b4b
script/histogram_probs.rb	644	1.58 KB	6f885155b7ec7f5c6977622f433784432d1fcb7031d1c0bbc4bd122d6ba995d0
script/degenerate_peptides.rb	755	1.2 KB	e96ec7c0057eb846e00f7ce4b476237baf3c85e7fea0c5459e031e35d69ea98b
script/prep_dir.rb	755	2.72 KB	a63bd0114bca0f09bf7ec26842f330679325a0f672a3a7862f9ae1f0580a6344
script/compile_and_plot_smriti_final.rb	755	1.99 KB	60368319fa92fa59599d09a903f61568bde9f2a1932d84f34fb123d467a93d36
script/tpp_installer.rb	755	7.78 KB	bef1c17c952b789c66ff0175ef9c6669203ee80f80a57dfb5f7b78353fcd3801
script/top_hit_per_scan.rb	755	1.79 KB	ac2f9326c5c1d300c869eaa1e6eeb6eb0e085e9f4a6f13218a6dde26ef989ba4
script/create_little_pepxml.rb	755	1.17 KB	90a1c48e7e54e39f85697025f4794ee619b93aa65a76d5439fbe089f094537b4
script/smriti_final_analysis.rb	755	2.52 KB	10314c366a1152af6549ba10c8fc6f828408c46a04771922a3b69d12965a8da3
script/get_apex_values_rexml.rb	755	958 Bytes	344f11baa03f4894a65769970c1a23e0ba0d1c707db227012c9ce1f2c2f2243b
script/simple_protein_digestion.rb	755	752 Bytes	0c4578001b1e6f1cb0491d7a6e116f8167db8e4e81f7e01b5a8dbeeb2dd0f199
script/peps_per_bin.rb	755	2.06 KB	163f99871d3f88672612179572c6655143b78b0bbb4a8abf804ce2cf8dd7614b
specs/ms/gradient_program_spec.rb	644	2.73 KB	887f3f05926833927fbc5af1cc7c7201aeb61dad2c7f07dde370e9ac6dd5ca4a
specs/ms/parser_spec.rb	644	2.85 KB	af6735a817815102853352b244eb582eaa1e92036c76b06df85a96615c2afb32
specs/ms/spectrum_spec.rb	644	16.3 KB	572c10d1a75ff951c98b11acff3bd3a02fa48e23cda26995bcd07d7a52a4d1b6
specs/ms/msrun_spec.rb	644	14.3 KB	eb5e6dc0f37e816bf4ec1ddfcbf03ea0d9c95e63c5b31944976a9bac606b31a7
specs/merge_deep_spec.rb	644	308 Bytes	0ebcc7feda01d5695c71d4456b679963a6efb0e027cf057a9e68eb4b12f904d2
specs/qvalue_spec.rb	644	1.73 KB	3df1957afc35f9b8575389335ba226e6b1ec37bc5f783e3117eaa89ee1204037
specs/spec_helper.rb	644	2.69 KB	c53905c4678f8c68ce90c434a32c002bb968889758176ae5528037a32bf6bfd4
specs/fasta_spec.rb	644	10.6 KB	9a20e99a657350898ab359ce6a0364c301c223312e5247e37f2e023529964d02
specs/transmem/phobius_spec.rb	644	12.9 KB	8b4005526f204bde57a186c7dfcd2546ea96eb18ec07eccb112b757d0e6f0c53
specs/transmem/toppred_spec.rb	644	17 KB	fa5d6d5900b4b03db61049e5c2ccff9d30a55cbe117dce22e0845e3249ea14fb
specs/align_spec.rb	644	2.29 KB	c15924e0a73098b2b8d0e9770ac7f2c1c31f35bb566f1555d6651b50e8463ea3
specs/spec_id/sqt_spec.rb	644	8.69 KB	786d4afd64780128bfa82648a4dea2933fef0627d3ef9d3990b349ca5150502a
specs/spec_id/sequest/pepxml_spec.rb	644	15.8 KB	756c63ba38131b4ab1f6e5bd68646bb06883537b64c22089239266f1974bed94
specs/spec_id/sequest/params_spec.rb	644	1.94 KB	908f5df5ea1bb4c57870f50b5f9656237c5acec910cca219ab0f76d088fde800
specs/spec_id/precision/filter_spec.rb	644	9.6 KB	82aa24f6b1fdcfc86b6e090e00406b8f0930525c2e0c2c45af0a93c941ba9886
specs/spec_id/precision/prob_spec_helper.rb	644	0 Bytes	e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855
specs/spec_id/precision/prob_spec.rb	644	2.54 KB	0ff5113c72ba6c1e869fc04c2cfcc49fa21b019105811725502f86b0acfe9b30
specs/spec_id/precision/filter/cmdline_spec.rb	644	552 Bytes	71ea2cc56056bf5012a75dd3746a00e935f44b6467de8148f61c765404de6a04
specs/spec_id/precision/filter/output_spec.rb	644	1 KB	6b4fde90cd5eee3f7993aed05e0495ffe27399d40eba3e5db7863c776bc3a775
specs/spec_id/proph/prot_summary_spec.rb	644	3.86 KB	0292685d1e2705c254175f40dd0d26c7258edfa8e342dd62d010a928f8fc9a6c
specs/spec_id/proph/pep_summary_spec.rb	644	4.31 KB	8be7460696b380270b60309dfc5e155fe4703fa7deebb5121f73fae01f85ba96
specs/spec_id/srf_spec.rb	644	5.09 KB	6a04ffa7882705488ef287e205f6825da24529777a862124d32c8c860ca1b085
specs/spec_id/srf_spec_helper.rb	644	5.68 KB	c91116dc8154f514e0aa7d4f51f8f00be194eb17b4b0a1e6d6527018bf49063f
specs/spec_id/digestor_spec.rb	644	2.49 KB	fc225ea4a949def92bcc94936befc4e6e59b05c4e9b7b7f24d81c6d2536f06e9
specs/spec_id/aa_freqs_spec.rb	644	2 KB	06cfd84a24b399016b81ebc7386572b98b0e3691a8638f976446ced5780a7b45
specs/rspec_autotest.rb	644	4.69 KB	e1c32af995a458e1ea0c2f65a5a22ea8d875a1f49b4702f5317403fc6770ee00
specs/pi_zero_spec.rb	644	4.06 KB	82b20eca67b8e36df6dde6b622dc1c4561ef4fb00d7ed7ae0a2db4b236dc30b7
specs/load_bin_path.rb	644	243 Bytes	b21b5c0383eb8a5c55360134c681cb676d0f47b121c74f141ea9ff21abd84c55
specs/spec_id_spec.rb	644	11.3 KB	4d0de8e2f810c9945c03c6efdffa3b1c3c6b87d7a7ab1951fb5355194e5d6828
specs/validator/true_pos_spec.rb	644	1.65 KB	db318a751f50d6983215c2c938dd888eea729d14850518800c615b42359d0962
specs/validator/aa_est_spec.rb	644	2.02 KB	f541f4d8d0d67f0efd47feb2f77b30f76d498dced8a2c7064d2d1b19042d667d
specs/validator/background_spec.rb	644	11.9 KB	949e725d5d59f9b8ad0818abecfd091b51bbdfcd6e6c36c6c64a8d5de0776cd8
specs/validator/bias_spec.rb	644	4.84 KB	c5244edad9c5a2d2044fa423029d8ad8c4f0ec07244e166b50dfab2ec08460b5
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