# -*- encoding: utf-8 -*- # stub: bioinform 0.3.1 ruby lib Gem::Specification.new do |s| s.name = "bioinform".freeze s.version = "0.3.1".freeze s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version= s.require_paths = ["lib".freeze] s.authors = ["Ilya Vorontsov".freeze] s.date = "2016-04-22" s.description = "A bunch of useful classes for bioinformatics".freeze s.email = ["prijutme4ty@gmail.com".freeze] s.executables = ["convert_motif".freeze, "pcm2pwm".freeze, "split_motifs".freeze] s.files = [".gitignore".freeze, "Gemfile".freeze, "Gemfile.lock".freeze, "Guardfile".freeze, "LICENSE".freeze, "README.md".freeze, "Rakefile".freeze, "TODO.txt".freeze, "bin/convert_motif".freeze, "bin/pcm2pwm".freeze, "bin/split_motifs".freeze, "bioinform.gemspec".freeze, "lib/bioinform.rb".freeze, "lib/bioinform/alphabet.rb".freeze, "lib/bioinform/background.rb".freeze, "lib/bioinform/cli.rb".freeze, "lib/bioinform/cli/convert_motif.rb".freeze, "lib/bioinform/cli/pcm2pwm.rb".freeze, "lib/bioinform/cli/split_motifs.rb".freeze, "lib/bioinform/conversion_algorithms.rb".freeze, "lib/bioinform/conversion_algorithms/pcm2ppm_converter.rb".freeze, "lib/bioinform/conversion_algorithms/pcm2pwm_converter.rb".freeze, "lib/bioinform/conversion_algorithms/pcm2pwm_mara_converter.rb".freeze, "lib/bioinform/conversion_algorithms/ppm2pcm_converter.rb".freeze, "lib/bioinform/conversion_algorithms/pwm2iupac_pwm_converter.rb".freeze, "lib/bioinform/conversion_algorithms/pwm2pcm_converter.rb".freeze, "lib/bioinform/data_models.rb".freeze, "lib/bioinform/data_models/named_model.rb".freeze, "lib/bioinform/data_models/pcm.rb".freeze, "lib/bioinform/data_models/pm.rb".freeze, "lib/bioinform/data_models/ppm.rb".freeze, "lib/bioinform/data_models/pwm.rb".freeze, "lib/bioinform/errors.rb".freeze, "lib/bioinform/formatters.rb".freeze, "lib/bioinform/formatters/consensus_formatter.rb".freeze, "lib/bioinform/formatters/motif_formatter.rb".freeze, "lib/bioinform/formatters/pretty_matrix_formatter.rb".freeze, "lib/bioinform/formatters/transfac_formatter.rb".freeze, "lib/bioinform/parsers.rb".freeze, "lib/bioinform/parsers/matrix_parser.rb".freeze, "lib/bioinform/parsers/motif_splitter.rb".freeze, "lib/bioinform/support.rb".freeze, "lib/bioinform/support/strip_doc.rb".freeze, "lib/bioinform/validator.rb".freeze, "lib/bioinform/version.rb".freeze, "spec/alphabet_spec.rb".freeze, "spec/background_spec.rb".freeze, "spec/cli/cli_spec.rb".freeze, "spec/cli/convert_motif_spec.rb".freeze, "spec/cli/data/pcm2pwm/KLF4 f2 spaced name.pcm".freeze, "spec/cli/data/pcm2pwm/KLF4_f2.pcm".freeze, "spec/cli/data/pcm2pwm/KLF4_f2.pwm.result".freeze, "spec/cli/data/pcm2pwm/SP1_f1.pcm".freeze, "spec/cli/data/pcm2pwm/SP1_f1.pwm.result".freeze, "spec/cli/data/split_motifs/GABPA_f1.mat.result".freeze, "spec/cli/data/split_motifs/KLF4_f2.mat.result".freeze, "spec/cli/data/split_motifs/SP1_f1.mat.result".freeze, "spec/cli/data/split_motifs/plain_collection.txt".freeze, "spec/cli/pcm2pwm_spec.rb".freeze, "spec/cli/shared_examples/convert_motif/motif_list_empty.rb".freeze, "spec/cli/shared_examples/convert_motif/several_motifs_specified.rb".freeze, "spec/cli/shared_examples/convert_motif/single_motif_specified.rb".freeze, "spec/cli/shared_examples/convert_motif/yield_help_string.rb".freeze, "spec/cli/shared_examples/convert_motif/yield_motif_conversion_error.rb".freeze, "spec/cli/split_motifs_spec.rb".freeze, "spec/converters/pcm2ppm_converter_spec.rb".freeze, "spec/converters/pcm2pwm_converter_spec.rb".freeze, "spec/converters/ppm2pcm_converter_spec.rb".freeze, "spec/converters/pwm2iupac_pwm_converter_spec.rb".freeze, "spec/converters/pwm2pcm_converter_spec.rb".freeze, "spec/data_models/named_model_spec.rb".freeze, "spec/data_models/pcm_spec.rb".freeze, "spec/data_models/pm_spec.rb".freeze, "spec/data_models/ppm_spec.rb".freeze, "spec/data_models/pwm_spec.rb".freeze, "spec/fabricators/motif_formats_fabricator.rb".freeze, "spec/formatters/consensus_formatter_spec.rb".freeze, "spec/formatters/raw_formatter_spec.rb".freeze, "spec/parsers/matrix_parser_spec.rb".freeze, "spec/parsers/motif_splitter_spec.rb".freeze, "spec/spec_helper.rb".freeze, "spec/spec_helper_source.rb".freeze, "spec/support_spec.rb".freeze] s.homepage = "".freeze s.rubygems_version = "3.5.10".freeze s.summary = "Classes for work with different input formats of positional matrices and IUPAC-words and making simple transform and statistics with them. Also module includes several useful extensions for Enumerable module like parametric map and callable symbols".freeze s.test_files = ["spec/alphabet_spec.rb".freeze, "spec/background_spec.rb".freeze, "spec/cli/cli_spec.rb".freeze, "spec/cli/convert_motif_spec.rb".freeze, "spec/cli/data/pcm2pwm/KLF4 f2 spaced name.pcm".freeze, "spec/cli/data/pcm2pwm/KLF4_f2.pcm".freeze, "spec/cli/data/pcm2pwm/KLF4_f2.pwm.result".freeze, "spec/cli/data/pcm2pwm/SP1_f1.pcm".freeze, "spec/cli/data/pcm2pwm/SP1_f1.pwm.result".freeze, "spec/cli/data/split_motifs/GABPA_f1.mat.result".freeze, "spec/cli/data/split_motifs/KLF4_f2.mat.result".freeze, "spec/cli/data/split_motifs/SP1_f1.mat.result".freeze, "spec/cli/data/split_motifs/plain_collection.txt".freeze, "spec/cli/pcm2pwm_spec.rb".freeze, "spec/cli/shared_examples/convert_motif/motif_list_empty.rb".freeze, "spec/cli/shared_examples/convert_motif/several_motifs_specified.rb".freeze, "spec/cli/shared_examples/convert_motif/single_motif_specified.rb".freeze, "spec/cli/shared_examples/convert_motif/yield_help_string.rb".freeze, "spec/cli/shared_examples/convert_motif/yield_motif_conversion_error.rb".freeze, "spec/cli/split_motifs_spec.rb".freeze, "spec/converters/pcm2ppm_converter_spec.rb".freeze, "spec/converters/pcm2pwm_converter_spec.rb".freeze, "spec/converters/ppm2pcm_converter_spec.rb".freeze, "spec/converters/pwm2iupac_pwm_converter_spec.rb".freeze, "spec/converters/pwm2pcm_converter_spec.rb".freeze, "spec/data_models/named_model_spec.rb".freeze, "spec/data_models/pcm_spec.rb".freeze, "spec/data_models/pm_spec.rb".freeze, "spec/data_models/ppm_spec.rb".freeze, "spec/data_models/pwm_spec.rb".freeze, "spec/fabricators/motif_formats_fabricator.rb".freeze, "spec/formatters/consensus_formatter_spec.rb".freeze, "spec/formatters/raw_formatter_spec.rb".freeze, "spec/parsers/matrix_parser_spec.rb".freeze, "spec/parsers/motif_splitter_spec.rb".freeze, "spec/spec_helper.rb".freeze, "spec/spec_helper_source.rb".freeze, "spec/support_spec.rb".freeze] end