bioinform-0.2.2

https://rubygems.org

bioinform

quick gemspec

.gem

.gem metadata (gemspec)

.gemspec

id: 359705

number: 0.2.2

platform: ruby

spec_sha256: a60a2243d468489736b0f39d54303cdcfaeb3c520e80d52a646b28111c6ae2a8

sha256: e3b4f271e84ca7554034a5f48e0731bebf413188c091ba0f330811cd6c81b29a

created_at: 2024-05-13 08:18:59 UTC

updated_at: 2024-06-07 23:53:49 UTC

position: 2

version_data_entries_count: 81

uploaded_at: 2015-09-03 15:47:28 UTC

indexed: true

has_extensions:

extensions:

Gem size: 40 KB

Version Data Entries

Total: 81

Unpacked size: 155 KB

Full NameModeUIDGIDMtimeLinknameSizeSHA
.gitignore10066400159 Bytesc8f3910fe27cc6d29beef87196b57a5246ffc9e09541a0685cf600d4ec859de8
Gemfile10066400376 Bytes02a76641ea73479fa578be447f93318e1d500fd3a43cb6de168b94d0c5f33856
Guardfile10066400302 Bytes556a331b23a3569f2a3ce93b7ea0cdf3f2ae8704ce751a99fe61aa6aef107e16
LICENSE100664001.05 KB99eecce69ee22102d57e12f137b60d2397d2794eca9784931d46ea6f554f82af
README.md100664001.42 KBe414386adf17db2dfb0b8058446d737c284dd178c578cb634ca9c65ebdde9915
Rakefile10066400105 Bytesae2e65ba5b3d0de075a0cb50823f7ff30eef9bef5de3c773bdcee8175ba67d9d
TODO.txt100664002.34 KB6dc11f41b47c89de8fb105625b43c24d0ac1a3fc919adf976e83035122264423
bin/convert_motif10077500115 Bytescf9cb07695f7a729fdcd9bde6cb2b11b33a0e60d03c8b9aa46a6245e3bbac310
bin/pcm2pwm10077500104 Bytesa995e28a4f733b6c8b77cb215f401436f07f6920fdbf55383f0eea9dfaee4fec
bin/split_motifs10077500113 Bytesb910e75c5e92301caa8c3b9a4871690ae1a8ace109015341d9707e90e6c74562
bioinform.gemspec10066400881 Bytesac543691d4f0fecafd3b07060376e2270c5ca2934172049be1855ec4555f4132
lib/bioinform.rb10066400413 Bytes6e019be41fa19b5b55e8382e5f69ccac986a30a27c3ec8b3b6b7b58e64c04db5
lib/bioinform/alphabet.rb100664002.99 KB36bcd9b0847d47378cf34e540f18a5128877c67dda39407ed706cd79c21a294c
lib/bioinform/background.rb100664002.41 KB0695b38b837ea38f3f3cd9b4858bf426a0292dc2a4be8389ea205665a067af9f
lib/bioinform/cli.rb10066400868 Bytes41a8b35a09785604106eb07c545b1706fc4a402b1c30849158b440ba15375caf
lib/bioinform/cli/convert_motif.rb100664005.85 KBe43742693b236fefff97a3629c60a4cff3a80eb52e786a68c7b00ea1a2176c8f
lib/bioinform/cli/pcm2pwm.rb100664002 KB721463e4a862d80996c2a0c2865ab8e799fdf4812a305895704ef3133533c1bf
lib/bioinform/cli/split_motifs.rb100664001.67 KB2f9e3a40845ab64c27001caf5d87744fa3e491b11e9e64ed7b68e9f5327b1478
lib/bioinform/conversion_algorithms.rb10066400365 Bytesb081cc5f9f338389b3375c5fd4446ff064910dc4a786789f6ed45cadf42bbf28
lib/bioinform/conversion_algorithms/pcm2ppm_converter.rb10066400556 Bytes591559aba8b5bed091b6cb77c0e13a49caaeb03be9413babe05f0968c69f9492
lib/bioinform/conversion_algorithms/pcm2pwm_converter.rb100664001.53 KB1c3f4afda2ecfba82890de32381a2dc26f8ee414b897d7b787a8faea6dff6a35
lib/bioinform/conversion_algorithms/pcm2pwm_mara_converter.rb10066400796 Bytes00ab28884f3d65016a969492dc9a200522da83ba4e696a165a3e1cc133353fba
lib/bioinform/conversion_algorithms/ppm2pcm_converter.rb10066400690 Bytesd81351c7489c2b7a9ec070980fabdc5cbf3534c2b3eeeb72f46eb9f9533742b1
lib/bioinform/conversion_algorithms/pwm2iupac_pwm_converter.rb10066400930 Bytes6eebba18e7a9c09ff646a1742e45099f08427d5f92c3fe763de7e983f79bff85
lib/bioinform/conversion_algorithms/pwm2pcm_converter.rb100664003.28 KB59bcda5337930470670c6e57f2944609a2582c11d8372715dce0e4a2291a46ac
lib/bioinform/data_models.rb10066400182 Bytes717db31bb5d550dc4c35d623029510f2de1e1bc4e81f407c664f9a8529ea58a5
lib/bioinform/data_models/named_model.rb10066400968 Bytesa8b7635849cd8d7d85c7db55b9f145743a13911d4c4143def817733791419340
lib/bioinform/data_models/pcm.rb10066400758 Bytesfe7ae40a449874d7d20e060c673cb36e65667831dc1c1ee37a1a8581f99eac22
lib/bioinform/data_models/pm.rb100664003 KB14d7b15ee047efa1bd961d068007ee4cbc0bb0b7ef95d52f593244543ffe6f8c
lib/bioinform/data_models/ppm.rb10066400563 Bytes1b5a14ad67828a8b1184c5c316c2aefeedf446117d5388cf7a184b0a5bc870b5
lib/bioinform/data_models/pwm.rb100664001.34 KB02b3140884746aa0633939c53d1d694b1f4e2eb0885f2e31f1fc5b16bb6f6e3c
lib/bioinform/errors.rb10066400336 Bytese10f223015ab5c5d63fea270203f8593fe0c0edda9287d1e336d75afcb205a2e
lib/bioinform/formatters.rb10066400199 Bytesa7a52d0c6cf2f6d6cb9ac22b14f916dcd0d8b1fd777526066215ac9ebc18e01e
lib/bioinform/formatters/consensus_formatter.rb100664001.02 KB8ce5ccf1ec46e7d8d5f678f2a3d6544f8b27422c4698c6fb1ba7d84b64c0b07f
lib/bioinform/formatters/motif_formatter.rb100664002.46 KB6a82340b3aff7a2a3b462cc7f159cd26b810a97eea2d54fa4ad5152699d0f5bd
lib/bioinform/formatters/pretty_matrix_formatter.rb100664001.09 KB2cfbfa3dd1e54c535eec83aa96f2545fc2ea1e1fbe40db5b273edc709e4c3583
lib/bioinform/formatters/transfac_formatter.rb10066400764 Bytesfe4851968f3591d78c0b8c6e3190c75ec84d60f16ea8f20d98f0b151843796b9
lib/bioinform/parsers.rb1006640083 Bytes4706ab0c068f985c13588d643aac77ffc4bec51824af91cddf0db5e12d755953
lib/bioinform/parsers/matrix_parser.rb100664002.38 KBa552a75ec8e3d89db2e51b3337259a24ea7239f7f8325b6c10f9aaa928bce4b3
lib/bioinform/parsers/motif_splitter.rb100664001.77 KBc0889207951d72773f58ebac624a11d1f101fcedff02d15537621eefb866fe66
lib/bioinform/support.rb100664001.85 KB399fce3c7021051750ad5855bbbad92d377d47a44ffabefd8f89fe7f209e8672
lib/bioinform/support/strip_doc.rb10066400111 Bytes37284bb6a2ded8b67eaab674fd3c7fe602e4b742dc783614f0baa0d96883c631
lib/bioinform/version.rb1006640041 Bytes5865d8945be2a8763cb3935bf65cb0e078f590bd28b022328a74727352cb02ec
spec/alphabet_spec.rb100664004.5 KB963893ccdefd58a03c036feea4dc0aa9712e315b73d94507e9707e05d5e91557
spec/background_spec.rb100664003.76 KBa0430b5eecbc4755445b219bbb58dc14d44f979be91eb3eae9b8660623a6a1d0
spec/cli/cli_spec.rb10066400645 Bytesbea81c932323bc6dbace0e07f79907c5f9bef08082a2f2504f32999e94ed35b7
spec/cli/convert_motif_spec.rb100664003.75 KBcea4372922b41a59f6a9f2e0abf982900315cc363dcb03f3d6739525f7f91075
spec/cli/data/pcm2pwm/KLF4 f2 spaced name.pcm10066400773 Bytes077ad078cac100e5f8c3faa1e74f145ec3e45ed43aa1478cea7d49803e86e8c3
spec/cli/data/pcm2pwm/KLF4_f2.pcm10066400773 Bytes077ad078cac100e5f8c3faa1e74f145ec3e45ed43aa1478cea7d49803e86e8c3
spec/cli/data/pcm2pwm/KLF4_f2.pwm.result10066400780 Bytesaa457d54fa5a00ad7fdba95fc4aa44c9d7279453054cb272e962cbded68e0c97
spec/cli/data/pcm2pwm/SP1_f1.pcm10066400833 Bytes041268c74faaccee1385363b2c44dcf48017c55b877ff09b44836cd45f0a56e6
spec/cli/data/pcm2pwm/SP1_f1.pwm.result10066400870 Bytes33e8d3bb18442585b86b953ba831660b785c75c1b326dca6af80200d468c72a5
spec/cli/data/split_motifs/GABPA_f1.mat.result100664001023 Bytes1bc690aeed22da3caf505e0f342b09c7b5294354d6e22e4dc7922e072718bf21
spec/cli/data/split_motifs/KLF4_f2.mat.result10066400778 Bytes84930d2d153b4bacf9565b47364393b223f56f7a2fcab68f4085322bcd6ca106
spec/cli/data/split_motifs/SP1_f1.mat.result10066400867 Bytes2689028278dd42ce24cb666b655d236d80fb18de8c28a73e4b7f61c3753a03b7
spec/cli/data/split_motifs/plain_collection.txt100664002.63 KB529c117e649358f57b820178c0cdad55268f169f4d5fd468685c6c018d473f0b
spec/cli/pcm2pwm_spec.rb100664003.07 KB97af84d67ef0d77f46370bdb1baffa1ab983fc580db59e018b96d48bc60c3761
spec/cli/shared_examples/convert_motif/motif_list_empty.rb10066400456 Bytes5fe40b91f23694edd787d8b2ec71afc45df2ca622d06c77b63f432f551a396e6
spec/cli/shared_examples/convert_motif/several_motifs_specified.rb10066400422 Bytes8f9cc509050d34afa3ad2f92ff52ba57099200262c728190f741cd29bb50888a
spec/cli/shared_examples/convert_motif/single_motif_specified.rb100664001.33 KBb3d213126c663d0b7927deaa3dbdc3bdc83b709b87ba71ec4266f08544db8cf9
spec/cli/shared_examples/convert_motif/yield_help_string.rb10066400150 Bytese5383ddf687b96c0a775ac86695cd70175d27f1add9fcad10a4d10193a0b0939
spec/cli/shared_examples/convert_motif/yield_motif_conversion_error.rb10066400258 Bytesd162284a4317259ad7fdaab9ee45249821c4e97c3cd5eb802a891f74dd77cddd
spec/cli/split_motifs_spec.rb100664002.36 KBe5adb22da5f1558ac48dba456506db17d72cdb528ac0eb0443e161087fbf7411
spec/converters/pcm2ppm_converter_spec.rb100664001.7 KBbb5cc68df13da359fa448f39c1657984d614971a596baf5be8fd8055717fd227
spec/converters/pcm2pwm_converter_spec.rb100664003.8 KBc25c551eaa3c52f0d6190417995c615bf7398a4162aee46547712391e98544ed
spec/converters/ppm2pcm_converter_spec.rb100664001.71 KB2805570e6336154d3d2704272fcd71c7595e61c827c7b1321d427211d70ea742
spec/converters/pwm2iupac_pwm_converter_spec.rb100664003.62 KBbcaf3f01ce1f4432fdaddc37c2537a5729f979bf5281b167cd849b1a646fc1d1
spec/converters/pwm2pcm_converter_spec.rb100664002.75 KB1ec0b3666f29a32cf5ca5383a5b6d953c2a440afda7f7eb100afed32c5f3a42b
spec/data_models/named_model_spec.rb100664001.81 KBe136f280c41bfea057b647d46b0ad5cf201cdc91558b7b52a4899f284a811bd1
spec/data_models/pcm_spec.rb100664005.97 KB1bd657037be8af478214f5a6d71f4d5333726ce091841018d4bf092cfb6dd6ef
spec/data_models/pm_spec.rb100664008.37 KB8b7f24a6529b4b114602ed05fdcac6839be4fe71ed0eec2fd03619a18c1bb1c8
spec/data_models/ppm_spec.rb100664002.8 KB2fbfd785bbf82d8c7eedbe50509accb4c78c18e4f3dfaad5b1493b01eae6a9f0
spec/data_models/pwm_spec.rb100664005.83 KB82dfb991d4f1dcf13da8e96e986219633c2d0a8abad401b8be8de6fbe1f8a464
spec/fabricators/motif_formats_fabricator.rb100664007.53 KBd07ba711e3bd57a5627e917537d02271ecd9622668e065af5ebec0d6cb4c9f32
spec/formatters/consensus_formatter_spec.rb100664001.06 KB71e53cdace9dafe102b7c6cbc0064b716ba8c21dff2b82b72b20e619538b63f3
spec/formatters/raw_formatter_spec.rb100664008.7 KBe5e192d1db1f81d5a2c99032c1761cc381a02bcd031234cdd226e521ec656b54
spec/parsers/matrix_parser_spec.rb1006640013.3 KB5cad4c405ef086b068e6998b409db85e1f0fe4c1d8ec1181d6d011108232a439
spec/parsers/motif_splitter_spec.rb100664002.91 KB886ca3446158ba54408230e9e0aeeb8cf67816cdfa28a8d1dafae9d5434d9529
spec/spec_helper.rb10066400291 Bytesfe26e5ea81d275a1cf3ad2b3eedca9fb94fdf68ac3e91be5a6f5e7e06379d0ec
spec/spec_helper_source.rb100664002.44 KB4a1477b3305a7b9c2eb5e9f4f080604a09864054327acc95c2334de08f780cbd
spec/support_spec.rb100664001.05 KBb10902caebb5e483d036b45a10aa9d9bee3f73513d2e380bd1b428f4da45c52b