macroape-3.3.2

https://rubygems.org

id: 359012

number: 3.3.2

platform: ruby

spec_sha256: 085484c06f5fe476af94da41ab0b4a2ee72fd77e2f312876ecb4c075126cc393

sha256: dc3f5eda58692d081c65f5be83d25ffd2bf5910ecbceec81d0a042e17c438429

created_at: 2024-05-13 08:18:58 UTC

updated_at: 2024-06-07 23:47:29 UTC

position: 10

version_data_entries_count: 44

uploaded_at: 2012-07-07 20:32:11 UTC

indexed: true

has_extensions:

extensions:

Gem size: 19.5 KB

Version Data Entries

Total: 44

Unpacked size: 65.5 KB

Full Name	Mode	Size	SHA
.gitignore	644	162 Bytes	ec7b1e170f9388e75e09f8d4ac86946210799ae4421f541f3034a872220f6ce9
Gemfile	644	93 Bytes	e1a19fe193ef0193e3985fd15468b1282bee8f535d863ae39a863e261f3da2d1
LICENSE	644	1.08 KB	a3ef8e4a00d26f27f57e336c5b9ed9e231a53eae41e2b4991d52064fde45c5ff
README.md	644	2.71 KB	2822637163dacea922ef2c051cfe2df81b35250d546f6e3ccd0ae5320f51b1ef
Rakefile	644	894 Bytes	3ba1563660e2712ca86a9d68414ad2bd2886780adf238c5330803f3f02f50304
bin/eval_alignment	644	64 Bytes	0f0489604e53968865dcacde2073f99f4559f0992e2c77f358ec43c2adb3a117
bin/eval_similarity	644	65 Bytes	6f9ed7557dc09f6cdd06674ec7f9f5f2baa3b1af38d4cd7514545b5bb458b3ef
bin/find_pvalue	644	61 Bytes	12846ced98c0c81a8ceeb7721a68a05810b90048f5e27adab009401364299d6a
bin/find_threshold	644	64 Bytes	2ca677012805a5922648449879a4bf923c4e5c5938de1b4e14ef008e535a8cf4
bin/preprocess_collection	644	71 Bytes	b3439545a71782dad40616e3616ced65e742dacb11b37a781b68fcedb5ea9905
bin/scan_collection	644	65 Bytes	b9502d751c05a1ae50e1ed123138286ebfb00cabfacfe53c3779d59f708c4733
lib/macroape.rb	644	333 Bytes	62f274d8c337679aa5580f4994ef1675777ccb31f652cd446789bddca9a7441c
lib/macroape/aligned_pair_intersection.rb	644	7.15 KB	acb11dfbd5a21e3e2149985ac4521ad9c2ff4a8b1a5ff50025cdf637d9b3a9bd
lib/macroape/collection.rb	644	816 Bytes	237edbd44639217a60b13decbc60cfcacc7cb74fc071825ecebf7f5bbb5abd1c
lib/macroape/count_by_threshold.rb	644	453 Bytes	3684904f8ad0d5f5c144250d248d97250178b0c865d0faa1b630abc93e104460
lib/macroape/exec/eval_alignment.rb	644	4.8 KB	fe13624ecf5fa6209d45f8f09d8a3581433d7d7e7dc0220578fc68aafaf8f8f5
lib/macroape/exec/eval_similarity.rb	644	4.25 KB	af88882f47ec96e2f2eaea1410b01b108e9b69101c4b4f75c82cb3e4dc43843c
lib/macroape/exec/find_pvalue.rb	644	2.43 KB	bf944607c513709db6da1a3ce9f91b2dbe0b7948e7caa01f66458d0110fbd410
lib/macroape/exec/find_threshold.rb	644	2.15 KB	0b215c41c3f325de2da9c7d2769f594e3e16c471191721798cb5ce683e5735a2
lib/macroape/exec/preprocess_collection.rb	644	3.46 KB	52a4e68679ca8d266a4994a0f0036bfbf344605dfb116de6c061aa80bff9d35c
lib/macroape/exec/scan_collection.rb	644	5.11 KB	055290c9e0c72184f213af3c0d049389beca608342f6df0d9f63123ffe93cebb
lib/macroape/pwm_compare.rb	644	856 Bytes	fc3c56d5802e7fe4bc87aaf228a5f27bc34a60226ce4a86c42a736aeea18b08d
lib/macroape/pwm_compare_aligned.rb	644	3.61 KB	7b86e5ef5e377d629379dd4a64f6e16bcc19393add2b28648c533a8ec8e50777
lib/macroape/threshold_by_pvalue.rb	644	2.93 KB	67da37c46ce7878709ad6f2432970e439a62ea2dfcd6a2cabf765e12a0ba0203
lib/macroape/version.rb	644	43 Bytes	8a42d80204e2c16b8dd555aeaa8b0044116efd8887523bc1f4db935cb75cf44e
macroape.gemspec	644	1.16 KB	f8d94c2ce2f7da2dfbcc2fb343b7f128d73749a8581f858b0dfbc3b26f274bc5
test/data/AHR_si.pat	644	722 Bytes	a8304924977c401e63349f6b9af6c6813c405ad5c3030ee6bba6505c3c02ac83
test/data/KLF4_f2.pat	644	803 Bytes	4008999624df7698e42c4448dcee6f03a5db1a0eeb9ea832affe2d280d5aa6b3
test/data/KLF4_f2_scan_results_all.txt	644	150 Bytes	f5406473dccc6ce6dbf4f1b8c66f4ba2fe56d1ea5866909e76c0d02bbdc6b268
test/data/KLF4_f2_scan_results_default_cutoff.txt	644	109 Bytes	3481d96456de2b045a490096c521d8654b57fce76359b4f137ae0ad8ac7b1251
test/data/KLF4_f2_scan_results_precise_mode.txt	644	153 Bytes	31cd1bec8391d0feaa35dbdb320a2168b89067d497ca1aaf6a692059940777c9
test/data/SP1_f1.pat	644	910 Bytes	49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926
test/data/SP1_f1_revcomp.pat	644	885 Bytes	fb955cc195f575ec20a9724ac7c1f80f6fcb8f6a998e6c284a2c72fd6fcab9e3
test/data/test_collection.yaml	644	7.98 KB	57204adfa3a74b16d9c51584555cbac473344c51420a9e70253ca3ed6d72c9b2
test/data/test_collection/GABPA_f1.pat	644	1.03 KB	b2d9524de0ed018fb67b03ead0de28f389d75bcd83776c3492c38dc45f1e2df7
test/data/test_collection/KLF4_f2.pat	644	790 Bytes	83f3d3c31909ea396b4ac3bb3c6bee6eea748200e818a080da553913f409f40f
test/data/test_collection/SP1_f1.pat	644	910 Bytes	49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926
test/eval_alignment_similarity_test.rb	644	874 Bytes	cdf6d853220d5ab6f3c92af3ae50dd57b790c411cc7ab2600f68ccdb9d5371dc
test/eval_similarity_test.rb	644	1.08 KB	92b2f672ccbf1ade9ffa8a3b78c810919fbb98bcbb8e731579cf32b6340ee6fa
test/find_pvalue_test.rb	644	994 Bytes	122a365e7da2dbc429f39cb9e0f83eab9ebe587f5cf8c84fe0b3438706345d3c
test/find_threshold_test.rb	644	1.43 KB	ea17961d3fbb4f595a6dc56fefbfc90f38e0b21e12c104e5b8535f520bb7b124
test/preprocess_collection_test.rb	644	721 Bytes	8c7986df9decd91d14d8587dc48bde6da3e5d3d7a1718df1f194d09e5b3448ea
test/scan_collection_test.rb	644	984 Bytes	c961490c622a391f99f75475c8475af7cdf7842200f36972df40862f97397061
test/test_helper.rb	644	417 Bytes	3fe45cdccf583ba770751988c294d342512b6946e36b9307dcafd69f11258260