| lib/macroape.rb | 644 | 0 | 0 | | | 333 Bytes | 62f274d8c337679aa5580f4994ef1675777ccb31f652cd446789bddca9a7441c |
| .gitignore | 644 | 0 | 0 | | | 162 Bytes | ec7b1e170f9388e75e09f8d4ac86946210799ae4421f541f3034a872220f6ce9 |
| Gemfile | 644 | 0 | 0 | | | 93 Bytes | e1a19fe193ef0193e3985fd15468b1282bee8f535d863ae39a863e261f3da2d1 |
| LICENSE | 644 | 0 | 0 | | | 1.08 KB | a3ef8e4a00d26f27f57e336c5b9ed9e231a53eae41e2b4991d52064fde45c5ff |
| README.md | 644 | 0 | 0 | | | 2.71 KB | 2822637163dacea922ef2c051cfe2df81b35250d546f6e3ccd0ae5320f51b1ef |
| Rakefile | 644 | 0 | 0 | | | 894 Bytes | 3ba1563660e2712ca86a9d68414ad2bd2886780adf238c5330803f3f02f50304 |
| bin/eval_alignment | 644 | 0 | 0 | | | 64 Bytes | 0f0489604e53968865dcacde2073f99f4559f0992e2c77f358ec43c2adb3a117 |
| bin/eval_similarity | 644 | 0 | 0 | | | 65 Bytes | 6f9ed7557dc09f6cdd06674ec7f9f5f2baa3b1af38d4cd7514545b5bb458b3ef |
| bin/find_pvalue | 644 | 0 | 0 | | | 61 Bytes | 12846ced98c0c81a8ceeb7721a68a05810b90048f5e27adab009401364299d6a |
| bin/find_threshold | 644 | 0 | 0 | | | 64 Bytes | 2ca677012805a5922648449879a4bf923c4e5c5938de1b4e14ef008e535a8cf4 |
| bin/preprocess_collection | 644 | 0 | 0 | | | 71 Bytes | b3439545a71782dad40616e3616ced65e742dacb11b37a781b68fcedb5ea9905 |
| bin/scan_collection | 644 | 0 | 0 | | | 65 Bytes | b9502d751c05a1ae50e1ed123138286ebfb00cabfacfe53c3779d59f708c4733 |
| lib/macroape/aligned_pair_intersection.rb | 644 | 0 | 0 | | | 7.15 KB | acb11dfbd5a21e3e2149985ac4521ad9c2ff4a8b1a5ff50025cdf637d9b3a9bd |
| lib/macroape/collection.rb | 644 | 0 | 0 | | | 816 Bytes | 237edbd44639217a60b13decbc60cfcacc7cb74fc071825ecebf7f5bbb5abd1c |
| lib/macroape/count_by_threshold.rb | 644 | 0 | 0 | | | 453 Bytes | 3684904f8ad0d5f5c144250d248d97250178b0c865d0faa1b630abc93e104460 |
| lib/macroape/exec/eval_alignment.rb | 644 | 0 | 0 | | | 5.55 KB | 8848935f752b39bda3c344b84dc4bb1695d4bc756d2aa09a84ade1bad8853f46 |
| lib/macroape/exec/eval_similarity.rb | 644 | 0 | 0 | | | 4.25 KB | af88882f47ec96e2f2eaea1410b01b108e9b69101c4b4f75c82cb3e4dc43843c |
| lib/macroape/exec/find_pvalue.rb | 644 | 0 | 0 | | | 2.43 KB | bf944607c513709db6da1a3ce9f91b2dbe0b7948e7caa01f66458d0110fbd410 |
| lib/macroape/exec/find_threshold.rb | 644 | 0 | 0 | | | 2.15 KB | 0b215c41c3f325de2da9c7d2769f594e3e16c471191721798cb5ce683e5735a2 |
| lib/macroape/exec/preprocess_collection.rb | 644 | 0 | 0 | | | 3.36 KB | af5c1ee38ada65ebdda1f5dbb10ad20b83ba69d2457378c918db886b8feb6704 |
| lib/macroape/exec/scan_collection.rb | 644 | 0 | 0 | | | 5.19 KB | acbc792f7a50fef7ef2c55317fff983440e3062ebdd5105ab26d2950835c3e46 |
| lib/macroape/pwm_compare.rb | 644 | 0 | 0 | | | 1.67 KB | 9a24d15521d88d1dadf99d8c124117a16af0fb226cc15ff8ce740637e1f99361 |
| lib/macroape/pwm_compare_aligned.rb | 644 | 0 | 0 | | | 1.83 KB | 9750ae58cd9dcd9aa462ff4473e4e23a5db51fc9c8dbaf686cec01c3206a3276 |
| lib/macroape/threshold_by_pvalue.rb | 644 | 0 | 0 | | | 2.83 KB | f3e32744270cb313555d2f99e95ea2a6339367f71fca3f19c32131e6f7a9e44d |
| lib/macroape/version.rb | 644 | 0 | 0 | | | 43 Bytes | f078d9c808fcdddd75497a561e25fd116cdd5e679d7e09a3f7ec6d4df62ef143 |
| macroape.gemspec | 644 | 0 | 0 | | | 1.16 KB | eb338e29fc375721e53f761375e436dbc22f56599c4e2dc7128c11f13c628c87 |
| test/data/AHR_si.pat | 644 | 0 | 0 | | | 722 Bytes | a8304924977c401e63349f6b9af6c6813c405ad5c3030ee6bba6505c3c02ac83 |
| test/data/KLF4_f2.pat | 644 | 0 | 0 | | | 803 Bytes | 4008999624df7698e42c4448dcee6f03a5db1a0eeb9ea832affe2d280d5aa6b3 |
| test/data/KLF4_f2_scan_results_all.txt | 644 | 0 | 0 | | | 150 Bytes | f5406473dccc6ce6dbf4f1b8c66f4ba2fe56d1ea5866909e76c0d02bbdc6b268 |
| test/data/KLF4_f2_scan_results_default_cutoff.txt | 644 | 0 | 0 | | | 109 Bytes | 3481d96456de2b045a490096c521d8654b57fce76359b4f137ae0ad8ac7b1251 |
| test/data/KLF4_f2_scan_results_precise_mode.txt | 644 | 0 | 0 | | | 153 Bytes | 31cd1bec8391d0feaa35dbdb320a2168b89067d497ca1aaf6a692059940777c9 |
| test/data/SP1_f1.pat | 644 | 0 | 0 | | | 910 Bytes | 49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926 |
| test/data/SP1_f1_revcomp.pat | 644 | 0 | 0 | | | 885 Bytes | fb955cc195f575ec20a9724ac7c1f80f6fcb8f6a998e6c284a2c72fd6fcab9e3 |
| test/data/test_collection.yaml | 644 | 0 | 0 | | | 7.98 KB | 57204adfa3a74b16d9c51584555cbac473344c51420a9e70253ca3ed6d72c9b2 |
| test/data/test_collection/GABPA_f1.pat | 644 | 0 | 0 | | | 1.03 KB | b2d9524de0ed018fb67b03ead0de28f389d75bcd83776c3492c38dc45f1e2df7 |
| test/data/test_collection/KLF4_f2.pat | 644 | 0 | 0 | | | 799 Bytes | 20dbd7ef4d2aa5fd1d9ca9f23191da684b5de89ea94f4e73db8e8e3e1017310e |
| test/data/test_collection/SP1_f1.pat | 644 | 0 | 0 | | | 910 Bytes | 49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926 |
| test/eval_alignment_similarity_test.rb | 644 | 0 | 0 | | | 874 Bytes | cdf6d853220d5ab6f3c92af3ae50dd57b790c411cc7ab2600f68ccdb9d5371dc |
| test/eval_similarity_test.rb | 644 | 0 | 0 | | | 1.08 KB | 92b2f672ccbf1ade9ffa8a3b78c810919fbb98bcbb8e731579cf32b6340ee6fa |
| test/find_pvalue_test.rb | 644 | 0 | 0 | | | 994 Bytes | 122a365e7da2dbc429f39cb9e0f83eab9ebe587f5cf8c84fe0b3438706345d3c |
| test/find_threshold_test.rb | 644 | 0 | 0 | | | 1.43 KB | ea17961d3fbb4f595a6dc56fefbfc90f38e0b21e12c104e5b8535f520bb7b124 |
| test/preprocess_collection_test.rb | 644 | 0 | 0 | | | 497 Bytes | 7731817b6cecc51f90d8f8a8d279e16955286bb7ebc293ad87b4100c6eb83421 |
| test/scan_collection_test.rb | 644 | 0 | 0 | | | 984 Bytes | c961490c622a391f99f75475c8475af7cdf7842200f36972df40862f97397061 |
| test/test_helper.rb | 644 | 0 | 0 | | | 417 Bytes | 3fe45cdccf583ba770751988c294d342512b6946e36b9307dcafd69f11258260 |