macroape-3.3.0

https://rubygems.org

id: 359010

number: 3.3.0

platform: ruby

spec_sha256: b60112bd2b82780383612131bd9c7bad9a10f963728e486af85c59ab7d397d0f

sha256: e41ad119f25202c7acf1095312d0a09a67945a0aa46a99a40e5efc2453c4282d

created_at: 2024-05-13 08:18:58 UTC

updated_at: 2024-06-07 23:47:28 UTC

position: 12

version_data_entries_count: 44

uploaded_at: 2012-06-20 23:05:59 UTC

indexed: true

has_extensions:

extensions:

Gem size: 19 KB

Version Data Entries

Total: 44

Unpacked size: 64.6 KB

Full Name	Mode	Size	SHA
.gitignore	644	162 Bytes	ec7b1e170f9388e75e09f8d4ac86946210799ae4421f541f3034a872220f6ce9
Gemfile	644	93 Bytes	e1a19fe193ef0193e3985fd15468b1282bee8f535d863ae39a863e261f3da2d1
LICENSE	644	1.08 KB	a3ef8e4a00d26f27f57e336c5b9ed9e231a53eae41e2b4991d52064fde45c5ff
README.md	644	2.72 KB	2b6ba048316ee6276af5ed2eb8022905d671c5449c5a9e82a87a3af9da21c26e
Rakefile	644	894 Bytes	3ba1563660e2712ca86a9d68414ad2bd2886780adf238c5330803f3f02f50304
bin/eval_alignment	644	64 Bytes	0f0489604e53968865dcacde2073f99f4559f0992e2c77f358ec43c2adb3a117
bin/eval_similarity	644	65 Bytes	6f9ed7557dc09f6cdd06674ec7f9f5f2baa3b1af38d4cd7514545b5bb458b3ef
bin/find_pvalue	644	61 Bytes	12846ced98c0c81a8ceeb7721a68a05810b90048f5e27adab009401364299d6a
bin/find_threshold	644	64 Bytes	2ca677012805a5922648449879a4bf923c4e5c5938de1b4e14ef008e535a8cf4
bin/preprocess_collection	644	71 Bytes	b3439545a71782dad40616e3616ced65e742dacb11b37a781b68fcedb5ea9905
bin/scan_collection	644	65 Bytes	b9502d751c05a1ae50e1ed123138286ebfb00cabfacfe53c3779d59f708c4733
lib/macroape.rb	644	333 Bytes	62f274d8c337679aa5580f4994ef1675777ccb31f652cd446789bddca9a7441c
lib/macroape/aligned_pair_intersection.rb	644	7.15 KB	acb11dfbd5a21e3e2149985ac4521ad9c2ff4a8b1a5ff50025cdf637d9b3a9bd
lib/macroape/collection.rb	644	519 Bytes	50e02ab65dd888c75a564c4baff02da5bcbc6f5e1d5472ac66c4b8c4ce98d0b6
lib/macroape/count_by_threshold.rb	644	453 Bytes	3684904f8ad0d5f5c144250d248d97250178b0c865d0faa1b630abc93e104460
lib/macroape/exec/eval_alignment.rb	644	5.55 KB	8848935f752b39bda3c344b84dc4bb1695d4bc756d2aa09a84ade1bad8853f46
lib/macroape/exec/eval_similarity.rb	644	4.27 KB	9e0ebb3b7ece4309d4c97981d2ad92c949c7896e1d44dcacc0a95b95bfc62aa6
lib/macroape/exec/find_pvalue.rb	644	2.45 KB	0df0e0c9700c69ce874cd457f93d24f2a1c783272a2c3dd2d97f32a02240074a
lib/macroape/exec/find_threshold.rb	644	2.17 KB	1e82f70ae1760824f41177e957c30996b82c0db2fda8f6c3b77d14a8f53342e2
lib/macroape/exec/preprocess_collection.rb	644	3.38 KB	05aa6c6f1b4ca5d7e27db88fb55756029cd74823e78f844032b6ef2a45b46fee
lib/macroape/exec/scan_collection.rb	644	5.21 KB	e129468aa4d8e5cfc5ae013bb3c4fae331cba964675cde4256ebe63578661732
lib/macroape/pwm_compare.rb	644	1.67 KB	9a24d15521d88d1dadf99d8c124117a16af0fb226cc15ff8ce740637e1f99361
lib/macroape/pwm_compare_aligned.rb	644	1.83 KB	9750ae58cd9dcd9aa462ff4473e4e23a5db51fc9c8dbaf686cec01c3206a3276
lib/macroape/threshold_by_pvalue.rb	644	2.83 KB	f3e32744270cb313555d2f99e95ea2a6339367f71fca3f19c32131e6f7a9e44d
lib/macroape/version.rb	644	43 Bytes	aa525de553ad71b4a650dc1c2140962a7db795f34f44736773b63abe6a62fc38
macroape.gemspec	644	1.14 KB	36b065597ee48c42e8005070cdebc209570f390d3e634eb13c2b5a872b104321
test/data/AHR_si.pat	644	722 Bytes	a8304924977c401e63349f6b9af6c6813c405ad5c3030ee6bba6505c3c02ac83
test/data/KLF4_f2.pat	644	803 Bytes	4008999624df7698e42c4448dcee6f03a5db1a0eeb9ea832affe2d280d5aa6b3
test/data/KLF4_f2_scan_results_all.txt	644	150 Bytes	f5406473dccc6ce6dbf4f1b8c66f4ba2fe56d1ea5866909e76c0d02bbdc6b268
test/data/KLF4_f2_scan_results_default_cutoff.txt	644	109 Bytes	3481d96456de2b045a490096c521d8654b57fce76359b4f137ae0ad8ac7b1251
test/data/KLF4_f2_scan_results_precise_mode.txt	644	153 Bytes	31cd1bec8391d0feaa35dbdb320a2168b89067d497ca1aaf6a692059940777c9
test/data/SP1_f1.pat	644	910 Bytes	49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926
test/data/SP1_f1_revcomp.pat	644	885 Bytes	fb955cc195f575ec20a9724ac7c1f80f6fcb8f6a998e6c284a2c72fd6fcab9e3
test/data/test_collection.yaml	644	7.98 KB	57204adfa3a74b16d9c51584555cbac473344c51420a9e70253ca3ed6d72c9b2
test/data/test_collection/GABPA_f1.pat	644	1.03 KB	b2d9524de0ed018fb67b03ead0de28f389d75bcd83776c3492c38dc45f1e2df7
test/data/test_collection/KLF4_f2.pat	644	799 Bytes	20dbd7ef4d2aa5fd1d9ca9f23191da684b5de89ea94f4e73db8e8e3e1017310e
test/data/test_collection/SP1_f1.pat	644	910 Bytes	49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926
test/eval_alignment_similarity_test.rb	644	874 Bytes	cdf6d853220d5ab6f3c92af3ae50dd57b790c411cc7ab2600f68ccdb9d5371dc
test/eval_similarity_test.rb	644	1.08 KB	92b2f672ccbf1ade9ffa8a3b78c810919fbb98bcbb8e731579cf32b6340ee6fa
test/find_pvalue_test.rb	644	994 Bytes	122a365e7da2dbc429f39cb9e0f83eab9ebe587f5cf8c84fe0b3438706345d3c
test/find_threshold_test.rb	644	1.43 KB	ea17961d3fbb4f595a6dc56fefbfc90f38e0b21e12c104e5b8535f520bb7b124
test/preprocess_collection_test.rb	644	453 Bytes	5e069f8af6040f2b04350ccd1dfa94956dfe0303d82b0ef16c7af70bd550f079
test/scan_collection_test.rb	644	875 Bytes	4a21e397ff79314a0be358f877c2a1e31d89e13149bfa47bdd5fbc6c7fb6dbee
test/test_helper.rb	644	319 Bytes	13431d5730df9ec5f7454b32ae1149c792a1003fa70067ccb43171fae9ff992f