macroape-3.2.2

https://rubygems.org

id: 359009

number: 3.2.2

platform: ruby

spec_sha256: 629dd40c9c6ede2e6c90bdc14fb56b3ef799e86ff5dc0c5e53ed319c05bc2ec8

sha256: c865f006a55100e452c17e2b4cf5db728a5e2a142fb01ac5d88408cebb961df6

created_at: 2024-05-13 08:18:58 UTC

updated_at: 2024-06-07 23:47:28 UTC

position: 13

version_data_entries_count: 49

uploaded_at: 2012-05-28 13:08:37 UTC

indexed: true

has_extensions:

extensions:

Gem size: 20.5 KB

Version Data Entries

Total: 49

Unpacked size: 67.5 KB

Full Name	Mode	Size	SHA
.gitignore	644	162 Bytes	ec7b1e170f9388e75e09f8d4ac86946210799ae4421f541f3034a872220f6ce9
Gemfile	644	93 Bytes	e1a19fe193ef0193e3985fd15468b1282bee8f535d863ae39a863e261f3da2d1
LICENSE	644	1.08 KB	a3ef8e4a00d26f27f57e336c5b9ed9e231a53eae41e2b4991d52064fde45c5ff
README.md	644	2.72 KB	2b6ba048316ee6276af5ed2eb8022905d671c5449c5a9e82a87a3af9da21c26e
Rakefile	644	154 Bytes	c436c08b9bee20da7cc3f44ab1d9568e25007276fe3f2dfd477a5e1bd8214e95
bin/eval_alignment	644	64 Bytes	0f0489604e53968865dcacde2073f99f4559f0992e2c77f358ec43c2adb3a117
bin/eval_similarity	644	65 Bytes	6f9ed7557dc09f6cdd06674ec7f9f5f2baa3b1af38d4cd7514545b5bb458b3ef
bin/find_pvalue	644	61 Bytes	12846ced98c0c81a8ceeb7721a68a05810b90048f5e27adab009401364299d6a
bin/find_threshold	644	64 Bytes	2ca677012805a5922648449879a4bf923c4e5c5938de1b4e14ef008e535a8cf4
bin/preprocess_collection	644	71 Bytes	b3439545a71782dad40616e3616ced65e742dacb11b37a781b68fcedb5ea9905
bin/scan_collection	644	65 Bytes	b9502d751c05a1ae50e1ed123138286ebfb00cabfacfe53c3779d59f708c4733
lib/macroape.rb	644	722 Bytes	29548a30d0cda13aa0007f1cf1425ba02bbdaa836a20e69342efad634a4f81af
lib/macroape/aligned_pair_intersection.rb	644	7.21 KB	db1c58811e65f222e53121d13480a1654f3ab867561243180b5b63d15536f5bc
lib/macroape/aligned_pair_metrics.rb	644	843 Bytes	2a7cb1bccefe33860219297c0959e02df53cd51016eb42917b50bcaa72ff604b
lib/macroape/aligned_pair_transformations.rb	644	809 Bytes	4ed9ce86d72f5d509e656a7eae0851e9f4ac3a34552a4f38011e7d2cf46f35cc
lib/macroape/collection.rb	644	540 Bytes	44a533ab80de71d2cfb8386799a84bbe358e16a32731fc618961f84dd1d7773f
lib/macroape/count_by_threshold.rb	644	1.2 KB	d7673079595262d63667cdc37c914533dcd5da6a29d8f27701ceeea418270438
lib/macroape/exec/eval_alignment.rb	644	5.45 KB	a09722978de97b73865dfb3cc7dbcdf1fdd71adffe0878a7bd45a2b461cc094b
lib/macroape/exec/eval_similarity.rb	644	4.14 KB	2f1da5b9226cdc6017db9b8ddb06acee47385f08fd10673c1c590bc926cbcbd7
lib/macroape/exec/find_pvalue.rb	644	2.39 KB	4899e76a4094772241cc8d140554c3f7a00adb60e02458807ad2261ab4566621
lib/macroape/exec/find_threshold.rb	644	2.11 KB	7d451fb8440fd167c9b1b0ef27a75c90705ea514f7aaeb16a10f2204c87963e3
lib/macroape/exec/preprocess_collection.rb	644	3.24 KB	3f9d415acca268c815493b1497655f8d57c84306ea0b38bbe4bf168e825c630f
lib/macroape/exec/scan_collection.rb	644	5.09 KB	c77591c46c717d15b42a3b2feea02b4752540426eb4b423aa40268272fe26cd5
lib/macroape/extract_pwm.rb	644	1.15 KB	7f9fd1c2dfaa67cb38be939a089e6b107002a5e0009b856bcaebc4914ca4bda9
lib/macroape/gauss_estimation.rb	644	1.1 KB	dc36609a34cbe09d7cc39dce3b1bcd61790c6dab04e03742102b705a5b52a853
lib/macroape/matrix_information.rb	644	965 Bytes	f5acf5fa68ea0e3f5826804f47e483ab0c085c656478d4348fee99e1bed45348
lib/macroape/matrix_on_background.rb	644	442 Bytes	4e7e1a3270662d164af058ca4d435cb0559f014f8e5374cfbf955f898b452571
lib/macroape/matrix_transformations.rb	644	1.12 KB	d866a6a94c46c43eff4fad5c02319206f9938e1e892880b81322bc2cb15442dd
lib/macroape/pair_metrics.rb	644	311 Bytes	2a3bdaf6f4a40c129ab5956ff5dbdedf181de153ab306523e765cc5ceb2a2220
lib/macroape/pair_transformations.rb	644	1.3 KB	c8d93726bd9197d569a2a53c23bddf06255739d6a621e902df002317ad4fd300
lib/macroape/pwm_compare.rb	644	218 Bytes	f671e1ec2212f7d83d86ae807f4e7b5b2cb7adde1e30403b5e89edc23e9aa0f0
lib/macroape/pwm_compare_aligned.rb	644	413 Bytes	8d6781242c335ff404c99c169f83b9eca3b45ee75cb1449b848db23824ee488f
lib/macroape/single_matrix.rb	644	1.37 KB	50c375ad88eafcf5f0a0fd56ee8827613137c7486d72895b49fe7946e7f32b70
lib/macroape/support.rb	644	815 Bytes	c9175fa27ec548ed8f26feb172ec6f6f02fd00bd2ad9dcedacdef9db441442c3
lib/macroape/threshold_by_pvalue.rb	644	2.65 KB	294396f58c67ec8e72f51a56104d953027e3ec7c3d6c9580afdd58fd1193c11d
lib/macroape/version.rb	644	40 Bytes	f129898f3f2f6f5a08ab7be1f1f59ed49e97358a68c006fbab01ca13ba581a4a
macroape.gemspec	644	1.09 KB	2d5757f60bf1df36be66af7f33b430f9f16d0fc406d73363b60a6a96b0df530c
test/data/AHR_si.pat	644	722 Bytes	a8304924977c401e63349f6b9af6c6813c405ad5c3030ee6bba6505c3c02ac83
test/data/KLF4_f2.pat	644	803 Bytes	4008999624df7698e42c4448dcee6f03a5db1a0eeb9ea832affe2d280d5aa6b3
test/data/KLF4_f2_scan_results_all.txt	644	150 Bytes	f5406473dccc6ce6dbf4f1b8c66f4ba2fe56d1ea5866909e76c0d02bbdc6b268
test/data/KLF4_f2_scan_results_default_cutoff.txt	644	109 Bytes	3481d96456de2b045a490096c521d8654b57fce76359b4f137ae0ad8ac7b1251
test/data/KLF4_f2_scan_results_precise_mode.txt	644	153 Bytes	31cd1bec8391d0feaa35dbdb320a2168b89067d497ca1aaf6a692059940777c9
test/data/SP1_f1.pat	644	910 Bytes	49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926
test/data/SP1_f1_revcomp.pat	644	885 Bytes	fb955cc195f575ec20a9724ac7c1f80f6fcb8f6a998e6c284a2c72fd6fcab9e3
test/data/test_collection.yaml	644	4.69 KB	212238eb3babf82018b336b8a47f6ffe1bff22aa1560819929b2b36d41d90578
test/data/test_collection/GABPA_f1.pat	644	1.03 KB	b2d9524de0ed018fb67b03ead0de28f389d75bcd83776c3492c38dc45f1e2df7
test/data/test_collection/KLF4_f2.pat	644	799 Bytes	20dbd7ef4d2aa5fd1d9ca9f23191da684b5de89ea94f4e73db8e8e3e1017310e
test/data/test_collection/SP1_f1.pat	644	910 Bytes	49d482f8d3fbd2ccc4fcbfaab237e32b6a3001fccea2171dbd8e4f42c1ea1926
test/macroape_test.rb	644	5.27 KB	ec41090cbfce48f4693ba98e0fbc90d804e288d599351f4f5526707bbc99f444