# -*- encoding: utf-8 -*-
# stub: full_lengther_next 0.5.6 ruby lib

Gem::Specification.new do |s|
  s.name = "full_lengther_next".freeze
  s.version = "0.5.6".freeze

  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["Pedro Seoane & Noe Fernandez & Dario Guerrero ".freeze]
  s.date = "2015-12-07"
  s.description = "FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and in a distributed way to minimise computing time. It is able to classify unigenes to full-length, 5\u2019-end, 3\u2019-end and internal, suggesting which unknown genes are coding or not. It will be also shown that FULL-LENGTHERNEXT fixes frame shifts, one of the main mistake found in wrong entries of full-length sequences databases, and it is a fast tool to compare different transcriptome assemblies.".freeze
  s.email = ["seoanezonjic@hotmail.com & noeisneo@gmail.com & dariogf@gmail.com".freeze]
  s.executables = ["plot_taxonomy.rb".freeze, "plot_fln.rb".freeze, "download_fln_dbs.rb".freeze, "full_lengther_next".freeze, "make_user_db.rb".freeze, "make_test_dataset.rb".freeze]
  s.extra_rdoc_files = ["PostInstall.txt".freeze, "README.rdoc".freeze, "History.txt".freeze, "Manifest.txt".freeze]
  s.files = [".gemtest".freeze, "History.txt".freeze, "Manifest.txt".freeze, "PostInstall.txt".freeze, "README.rdoc".freeze, "Rakefile".freeze, "bin/download_fln_dbs.rb".freeze, "bin/full_lengther_next".freeze, "bin/make_test_dataset.rb".freeze, "bin/make_user_db.rb".freeze, "bin/plot_fln.rb".freeze, "bin/plot_taxonomy.rb".freeze, "lib/expresscanvas.zip".freeze, "lib/full_lengther_next.rb".freeze, "lib/full_lengther_next/classes/artifacts.rb".freeze, "lib/full_lengther_next/classes/blast_functions.rb".freeze, "lib/full_lengther_next/classes/cdhit.rb".freeze, "lib/full_lengther_next/classes/chimeric_seqs.rb".freeze, "lib/full_lengther_next/classes/common_functions.rb".freeze, "lib/full_lengther_next/classes/exonerate_result.rb".freeze, "lib/full_lengther_next/classes/fl_analysis.rb".freeze, "lib/full_lengther_next/classes/fl_string_utils.rb".freeze, "lib/full_lengther_next/classes/fln_stats.rb".freeze, "lib/full_lengther_next/classes/handle_db.rb".freeze, "lib/full_lengther_next/classes/my_worker.rb".freeze, "lib/full_lengther_next/classes/my_worker_EST.rb".freeze, "lib/full_lengther_next/classes/my_worker_manager_EST.rb".freeze, "lib/full_lengther_next/classes/my_worker_manager_fln.rb".freeze, "lib/full_lengther_next/classes/nc_rna.rb".freeze, "lib/full_lengther_next/classes/orf.rb".freeze, "lib/full_lengther_next/classes/reptrans.rb".freeze, "lib/full_lengther_next/classes/sequence.rb".freeze, "lib/full_lengther_next/classes/test_code.rb".freeze, "lib/full_lengther_next/classes/types.rb".freeze, "lib/full_lengther_next/classes/une_los_hit.rb".freeze, "lib/full_lengther_next/classes/warnings.rb".freeze, "script/console".freeze, "script/destroy".freeze, "script/generate".freeze, "test/test_full_lengther_next.rb".freeze, "test/test_helper.rb".freeze]
  s.homepage = "http://www.scbi.uma.es/downloads".freeze
  s.post_install_message = "PostInstall.txt".freeze
  s.rdoc_options = ["--main".freeze, "README.rdoc".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and in a distributed way to minimise computing time".freeze
  s.test_files = ["test/test_full_lengther_next.rb".freeze, "test/test_helper.rb".freeze]

  s.specification_version = 3

  s.add_runtime_dependency(%q<xml-simple>.freeze, [">= 1.0.12".freeze])
  s.add_runtime_dependency(%q<scbi_blast>.freeze, [">= 0.0.32".freeze])
  s.add_runtime_dependency(%q<scbi_mapreduce>.freeze, [">= 0.0.29".freeze])
  s.add_runtime_dependency(%q<scbi_fasta>.freeze, [">= 0.1.7".freeze])
  s.add_runtime_dependency(%q<bio-cd-hit-report>.freeze, [">= 0.1.0".freeze])
  s.add_runtime_dependency(%q<bio>.freeze, [">= 1.4.3".freeze])
  s.add_runtime_dependency(%q<scbi_plot>.freeze, [">= 0.0.6".freeze])
  s.add_development_dependency(%q<rdoc>.freeze, ["~> 3.10".freeze])
  s.add_development_dependency(%q<newgem>.freeze, [">= 1.5.3".freeze])
  s.add_development_dependency(%q<hoe>.freeze, ["~> 3.3".freeze])
end