# -*- encoding: utf-8 -*-
# stub: seqtrimnext 2.0.68 ruby lib

Gem::Specification.new do |s|
  s.name = "seqtrimnext".freeze
  s.version = "2.0.68".freeze

  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["Dario Guerrero".freeze, "Almudena Bocinos".freeze]
  s.date = "2016-12-14"
  s.description = "Seqtrimnext is a plugin based system to preprocess and clean sequences from multiple NGS sequencing platforms".freeze
  s.email = ["dariogf@gmail.com".freeze, "alkoke@gmail.com\nt".freeze]
  s.executables = ["create_graphs.rb".freeze, "extract_seqs.rb".freeze, "extract_seqs_from_fasta.rb".freeze, "extract_seqs_from_fastq.rb".freeze, "fasta2fastq.rb".freeze, "fastq2fasta.rb".freeze, "filter_database.rb".freeze, "gen_qual.rb".freeze, "get_seq.rb".freeze, "group_by_range.rb".freeze, "join_big_illumina_paired.sh".freeze, "join_ilumina_paired.rb".freeze, "parse_amplicons.rb".freeze, "parse_json_results.rb".freeze, "parse_params.rb".freeze, "resume_clusters.rb".freeze, "resume_execution_times.rb".freeze, "resume_rejected.rb".freeze, "resume_stn_contaminants.rb".freeze, "resume_stn_stats.rb".freeze, "reverse_paired.rb".freeze, "seqtrimnext".freeze, "split_fasta.rb".freeze, "split_fastq.rb".freeze, "split_ilumina_paired.rb".freeze, "split_paired.rb".freeze]
  s.files = [".gitignore".freeze, "Gemfile".freeze, "LICENSE.txt".freeze, "README.md".freeze, "Rakefile".freeze, "bin/create_graphs.rb".freeze, "bin/extract_seqs.rb".freeze, "bin/extract_seqs_from_fasta.rb".freeze, "bin/extract_seqs_from_fastq.rb".freeze, "bin/fasta2fastq.rb".freeze, "bin/fastq2fasta.rb".freeze, "bin/filter_database.rb".freeze, "bin/gen_qual.rb".freeze, "bin/get_seq.rb".freeze, "bin/group_by_range.rb".freeze, "bin/join_big_illumina_paired.sh".freeze, "bin/join_ilumina_paired.rb".freeze, "bin/parse_amplicons.rb".freeze, "bin/parse_json_results.rb".freeze, "bin/parse_params.rb".freeze, "bin/resume_clusters.rb".freeze, "bin/resume_execution_times.rb".freeze, "bin/resume_rejected.rb".freeze, "bin/resume_stn_contaminants.rb".freeze, "bin/resume_stn_stats.rb".freeze, "bin/reverse_paired.rb".freeze, "bin/seqtrimnext".freeze, "bin/split_fasta.rb".freeze, "bin/split_fastq.rb".freeze, "bin/split_ilumina_paired.rb".freeze, "bin/split_paired.rb".freeze, "lib/seqtrimnext.rb".freeze, "lib/seqtrimnext/actions/action_ab_adapter.rb".freeze, "lib/seqtrimnext/actions/action_ab_far_adapter.rb".freeze, "lib/seqtrimnext/actions/action_ab_left_adapter.rb".freeze, "lib/seqtrimnext/actions/action_empty_insert.rb".freeze, "lib/seqtrimnext/actions/action_ignore_repeated.rb".freeze, "lib/seqtrimnext/actions/action_indetermination.rb".freeze, "lib/seqtrimnext/actions/action_induced_low_complexity.rb".freeze, "lib/seqtrimnext/actions/action_insert.rb".freeze, "lib/seqtrimnext/actions/action_is_contaminated.rb".freeze, "lib/seqtrimnext/actions/action_key.rb".freeze, "lib/seqtrimnext/actions/action_left_adapter.rb".freeze, "lib/seqtrimnext/actions/action_left_primer.rb".freeze, "lib/seqtrimnext/actions/action_linker.rb".freeze, "lib/seqtrimnext/actions/action_low_complexity.rb".freeze, "lib/seqtrimnext/actions/action_low_high_size.rb".freeze, "lib/seqtrimnext/actions/action_low_quality.rb".freeze, "lib/seqtrimnext/actions/action_mid.rb".freeze, "lib/seqtrimnext/actions/action_middle_adapter.rb".freeze, "lib/seqtrimnext/actions/action_multiple_linker.rb".freeze, "lib/seqtrimnext/actions/action_paired_reads.rb".freeze, "lib/seqtrimnext/actions/action_poly_a.rb".freeze, "lib/seqtrimnext/actions/action_poly_t.rb".freeze, "lib/seqtrimnext/actions/action_rem_adit_artifacts.rb".freeze, "lib/seqtrimnext/actions/action_right_adapter.rb".freeze, "lib/seqtrimnext/actions/action_right_primer.rb".freeze, "lib/seqtrimnext/actions/action_sanger_left_adapter.rb".freeze, "lib/seqtrimnext/actions/action_sanger_right_adapter.rb".freeze, "lib/seqtrimnext/actions/action_short_insert.rb".freeze, "lib/seqtrimnext/actions/action_trim.rb".freeze, "lib/seqtrimnext/actions/action_unexpected_poly_t.rb".freeze, "lib/seqtrimnext/actions/action_unexpected_vector.rb".freeze, "lib/seqtrimnext/actions/action_user_contaminant.rb".freeze, "lib/seqtrimnext/actions/action_vectors.rb".freeze, "lib/seqtrimnext/actions/seqtrim_action.rb".freeze, "lib/seqtrimnext/classes/action_manager.rb".freeze, "lib/seqtrimnext/classes/em_classes/seqtrim_work_manager.rb".freeze, "lib/seqtrimnext/classes/em_classes/seqtrim_worker.rb".freeze, "lib/seqtrimnext/classes/extract_stats.rb".freeze, "lib/seqtrimnext/classes/gnu_plot_graph.rb".freeze, "lib/seqtrimnext/classes/graph_stats.rb".freeze, "lib/seqtrimnext/classes/install_database.rb".freeze, "lib/seqtrimnext/classes/install_requirements.rb".freeze, "lib/seqtrimnext/classes/list_db.rb".freeze, "lib/seqtrimnext/classes/make_blast_db.rb".freeze, "lib/seqtrimnext/classes/one_blast.rb".freeze, "lib/seqtrimnext/classes/params.rb".freeze, "lib/seqtrimnext/classes/piro.rb".freeze, "lib/seqtrimnext/classes/plugin_manager.rb".freeze, "lib/seqtrimnext/classes/scan_for_restr_site.rb".freeze, "lib/seqtrimnext/classes/scbi_stats.rb".freeze, "lib/seqtrimnext/classes/seqtrim.rb".freeze, "lib/seqtrimnext/classes/sequence.rb".freeze, "lib/seqtrimnext/classes/sequence_group.rb".freeze, "lib/seqtrimnext/classes/sequence_with_action.rb".freeze, "lib/seqtrimnext/plugins/.DS_Store".freeze, "lib/seqtrimnext/plugins/plugin.rb".freeze, "lib/seqtrimnext/plugins/plugin_ab_adapters.rb".freeze, "lib/seqtrimnext/plugins/plugin_adapters.rb".freeze, "lib/seqtrimnext/plugins/plugin_amplicons.rb".freeze, "lib/seqtrimnext/plugins/plugin_contaminants.rb".freeze, "lib/seqtrimnext/plugins/plugin_extract_inserts.rb".freeze, "lib/seqtrimnext/plugins/plugin_find_poly_at.rb".freeze, "lib/seqtrimnext/plugins/plugin_ignore_repeated.rb".freeze, "lib/seqtrimnext/plugins/plugin_indeterminations.rb".freeze, "lib/seqtrimnext/plugins/plugin_key.rb".freeze, "lib/seqtrimnext/plugins/plugin_linker.rb".freeze, "lib/seqtrimnext/plugins/plugin_low_complexity.rb".freeze, "lib/seqtrimnext/plugins/plugin_low_high_size.rb".freeze, "lib/seqtrimnext/plugins/plugin_low_quality.rb".freeze, "lib/seqtrimnext/plugins/plugin_mids.rb".freeze, "lib/seqtrimnext/plugins/plugin_sanger_adapters.rb".freeze, "lib/seqtrimnext/plugins/plugin_short_insert.rb".freeze, "lib/seqtrimnext/plugins/plugin_size_trim.rb".freeze, "lib/seqtrimnext/plugins/plugin_user_contaminants.rb".freeze, "lib/seqtrimnext/plugins/plugin_vectors.rb".freeze, "lib/seqtrimnext/plugins_old/.DS_Store".freeze, "lib/seqtrimnext/plugins_old/plugin_adapters_old.rb".freeze, "lib/seqtrimnext/plugins_old/plugin_low_quality_old.rb".freeze, "lib/seqtrimnext/plugins_old/plugin_rem_adit_artifacts.rb".freeze, "lib/seqtrimnext/templates/amplicons.txt".freeze, "lib/seqtrimnext/templates/genomics_454.txt".freeze, "lib/seqtrimnext/templates/genomics_454_with_paired.txt".freeze, "lib/seqtrimnext/templates/genomics_short_reads.txt".freeze, "lib/seqtrimnext/templates/genomics_short_reads_2.txt".freeze, "lib/seqtrimnext/templates/only_quality.txt".freeze, "lib/seqtrimnext/templates/sanger.txt".freeze, "lib/seqtrimnext/templates/transcriptomics_454.txt".freeze, "lib/seqtrimnext/templates/transcriptomics_454_plants.txt".freeze, "lib/seqtrimnext/templates/transcriptomics_short_reads.txt".freeze, "lib/seqtrimnext/utils/extract_samples.rb".freeze, "lib/seqtrimnext/utils/fasta2xml.rb".freeze, "lib/seqtrimnext/utils/global_match.rb".freeze, "lib/seqtrimnext/utils/hash_stats.rb".freeze, "lib/seqtrimnext/utils/json_utils.rb".freeze, "lib/seqtrimnext/utils/load_fasta_names_in_hash.rb".freeze, "lib/seqtrimnext/utils/load_qual_in_hash.rb".freeze, "lib/seqtrimnext/utils/recover_mid.rb".freeze, "lib/seqtrimnext/utils/string_utils.rb".freeze, "lib/seqtrimnext/version.rb".freeze, "seqtrimnext.gemspec".freeze]
  s.homepage = "".freeze
  s.licenses = ["MIT".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "Sequences preprocessing and cleaning software".freeze

  s.specification_version = 4

  s.add_development_dependency(%q<bundler>.freeze, ["~> 1.7".freeze])
  s.add_development_dependency(%q<rake>.freeze, ["~> 10.0".freeze])
  s.add_runtime_dependency(%q<narray>.freeze, [">= 0".freeze])
  s.add_runtime_dependency(%q<gnuplot>.freeze, [">= 0".freeze])
  s.add_runtime_dependency(%q<term-ansicolor>.freeze, [">= 1.0.5".freeze])
  s.add_runtime_dependency(%q<xml-simple>.freeze, [">= 1.0.12".freeze])
  s.add_runtime_dependency(%q<scbi_blast>.freeze, [">= 0.0.34".freeze])
  s.add_runtime_dependency(%q<scbi_mapreduce>.freeze, [">= 0.0.38".freeze])
  s.add_runtime_dependency(%q<scbi_fasta>.freeze, [">= 0.1.7".freeze])
  s.add_runtime_dependency(%q<scbi_fastq>.freeze, [">= 0.0.18".freeze])
  s.add_runtime_dependency(%q<scbi_plot>.freeze, [">= 0.0.6".freeze])
  s.add_runtime_dependency(%q<scbi_math>.freeze, [">= 0.0.1".freeze])
  s.add_runtime_dependency(%q<scbi_headers>.freeze, [">= 0.0.2".freeze])
end