# -*- encoding: utf-8 -*-
# stub: viral_seq 1.9.0 ruby lib

Gem::Specification.new do |s|
  s.name = "viral_seq".freeze
  s.version = "1.9.0".freeze

  s.required_rubygems_version = Gem::Requirement.new(">= 1.3.6".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["Shuntai Zhou".freeze, "Michael Clark".freeze]
  s.date = "2024-11-13"
  s.description = "A Ruby Gem with bioinformatics tools for processing viral NGS data.\n                          Specifically for Primer-ID sequencing and HIV drug resistance analysis.".freeze
  s.email = ["shuntai.zhou@gmail.com".freeze, "clarkmu@gmail.com".freeze]
  s.executables = ["locator".freeze, "tcs".freeze, "tcs_log".freeze, "tcs_sdrm".freeze]
  s.files = [".gitignore".freeze, ".rspec".freeze, ".travis.yml".freeze, "CODE_OF_CONDUCT.md".freeze, "Gemfile".freeze, "Gemfile.lock".freeze, "LICENSE.txt".freeze, "README.md".freeze, "Rakefile".freeze, "bin/locator".freeze, "bin/tcs".freeze, "bin/tcs_log".freeze, "bin/tcs_sdrm".freeze, "docs/assets/img/cover.jpg".freeze, "docs/dr.json".freeze, "docs/sample_miseq_data/hivdr_control/r1.fastq.gz".freeze, "docs/sample_miseq_data/hivdr_control/r2.fastq.gz".freeze, "docs/variants_structure.pdf".freeze, "lib/viral_seq.rb".freeze, "lib/viral_seq/R.rb".freeze, "lib/viral_seq/constant.rb".freeze, "lib/viral_seq/drm_region_config.rb".freeze, "lib/viral_seq/drm_version.rb".freeze, "lib/viral_seq/enumerable.rb".freeze, "lib/viral_seq/hash.rb".freeze, "lib/viral_seq/hivdr.rb".freeze, "lib/viral_seq/math.rb".freeze, "lib/viral_seq/muscle.rb".freeze, "lib/viral_seq/pid.rb".freeze, "lib/viral_seq/recency.rb".freeze, "lib/viral_seq/recency_report.rb".freeze, "lib/viral_seq/ref_seq.rb".freeze, "lib/viral_seq/root.rb".freeze, "lib/viral_seq/rubystats.rb".freeze, "lib/viral_seq/sdrm.rb".freeze, "lib/viral_seq/seq_hash.rb".freeze, "lib/viral_seq/seq_hash_pair.rb".freeze, "lib/viral_seq/sequence.rb".freeze, "lib/viral_seq/string.rb".freeze, "lib/viral_seq/tcs_core.rb".freeze, "lib/viral_seq/tcs_dr.rb".freeze, "lib/viral_seq/tcs_json.rb".freeze, "lib/viral_seq/util/check_env.r".freeze, "lib/viral_seq/util/drm_list.json".freeze, "lib/viral_seq/util/drm_versions_config.json".freeze, "lib/viral_seq/util/recency_model/rt_only_fit.Rdata".freeze, "lib/viral_seq/util/recency_model/rt_v1v3_fit.Rdata".freeze, "lib/viral_seq/util/recency_model/v1v3_only_fit.Rdata".freeze, "lib/viral_seq/util/sdrm_r.r".freeze, "lib/viral_seq/version.rb".freeze, "viral_seq.gemspec".freeze]
  s.homepage = "https://github.com/ViralSeq/viral_seq".freeze
  s.licenses = ["MIT".freeze]
  s.post_install_message = "Thanks for installing!".freeze
  s.required_ruby_version = Gem::Requirement.new(">= 2.5".freeze)
  s.requirements = ["R required for some functions".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "A Ruby Gem containing bioinformatics tools for processing viral NGS data.".freeze

  s.specification_version = 4

  s.add_development_dependency(%q<bundler>.freeze, ["~> 2.5".freeze])
  s.add_development_dependency(%q<rake>.freeze, ["~> 13.0".freeze])
  s.add_development_dependency(%q<rspec>.freeze, ["~> 3.0".freeze])
  s.add_runtime_dependency(%q<muscle_bio>.freeze, ["= 0.4".freeze])
  s.add_runtime_dependency(%q<colorize>.freeze, ["~> 0.1".freeze])
  s.add_runtime_dependency(%q<prawn>.freeze, ["~> 2.3".freeze, ">= 2.3.0".freeze])
  s.add_runtime_dependency(%q<prawn-table>.freeze, ["~> 0.2".freeze, ">= 0.2.0".freeze])
  s.add_runtime_dependency(%q<combine_pdf>.freeze, ["~> 1.0".freeze, ">= 1.0.0".freeze])
end