bio-polymarker-1.3.2

https://rubygems.org

bio-polymarker

quick gemspec

.gem

.gem metadata (gemspec)

.gemspec

id: 1694869

number: 1.3.2

platform: ruby

spec_sha256: e6e6896afc0166099d96a0ea1dcaa83cb66ddb268becec8288fbb585ff1e3e45

sha256: c4ffe81a40a171d07cc703928f953dc92a9e56e4c89dc6f6f5eeb6a6c5434af0

created_at: 2024-09-26 15:33:15 UTC

updated_at: 2024-09-26 15:33:16 UTC

position: 1

version_data_entries_count: 175

uploaded_at: 2024-09-26 15:33:11 UTC

indexed: true

has_extensions: false

extensions: []

Gem size: 10.4 MB

Version Data Entries

Total: 175

Unpacked size: 21.4 MB

Full NameModeUIDGIDMtimeLinknameSizeSHA
.travis.yml10064400302 Bytesc993eb199a961930e1ebbe38e654d3046264a799daf08e001fe088fd35639a31
Gemfile10064400504 Bytesa3b884de5bb29f21c0f93e4019d676aa638103d7b4383d07edc16ed9fb34baed
README.md1006440010.2 KB0272ecd0d5147b8bccb9c41f7a6200f8bf9888f3afa202638f06e3eeab1debce
Rakefile100644001.69 KB726a67b8bcfc6584592feebde73cb34a6f75b341ae31e8a59adb4c770639e821
SECURITY.md10064400373 Bytes2550c0f6d6af0759980af1d8bacc499f7c0aabcc0daa362aeeb08c94a344ddad
VERSION100644006 Bytes33158972a53877b421cfe2598b8d93cab169963a4964b45ee889e85349979018
bin/bfr.rb100755003.41 KB56534e2d866864fb71d4245f51e303d6e162707bdbb013dc44c9bb6ebfc9914d
bin/blast_triads.rb100644004.97 KBc53da1e9c83edb37d90b28a1ae4ab087330c386cd9a4b50735f80eb44335d61f
bin/blast_triads_promoters.rb100644005.76 KB29a7eae631bb90a3fa169b9d093f72bd264501ac5fd915a9d482f2b726ac3f80
bin/count_variations.rb10075500893 Bytes5b3e3209bd8b451e17860efa760154299a7fbc6ca5c2439822b412ed0312505a
bin/filter_blat_by_target_coverage.rb100755001.56 KBdbd9af0665ddbf65e32dd8a68b589b1a32d9f274087f1528483d2999d617e9c2
bin/filter_exonerate_by_identity.rb100644001.08 KB340319251ceb695de4111f1f3bf57db00e88efad8c50e89263f02c6fa502642e
bin/find_best_blat_hit.rb10075500746 Bytescc304eecdbcec77e0d54cd19fafa1ca58a77d943499b37df55efb76632a91812
bin/find_best_exonerate.rb10064400760 Bytes46d1eb70a9c6bc19916f764c404a22d5e8e179c6508e2f14d6ed2e78cda90650
bin/get_longest_hsp_blastx_triads.rb100644001.83 KB94c3c9c83f54c2dd1088b4b0b46cc2ecd054fc7c1ed83eae9a3d67e4093bef50
bin/hexaploid_primers.rb100755005.49 KB7348973c927357f2f0ce4b5006c3ed682b52906c300a05cb2aee716ac9163f07
bin/homokaryot_primers.rb100755005.06 KBba8e49897501dfca40e78ddb0ae311e337c33b2e7a7676134433e7af30a9b0dc
bin/mafft_triads.rb100644003.23 KBadb50ec03bdfda66b3e7f14853d75cb9a2fef10d12084f6a1268fed1a4ecac0b
bin/mafft_triads_promoters.rb1006440010.4 KBa081322d00cebc93889ebd78483e791163749ff9133ca354d65a4b15879bb154
bin/map_markers_to_contigs.rb100755002.08 KBae475889929d3fe041715212c5b1443f7b0fd05f4c96048e125bd1051fdff87a
bin/marker_to_vcf.rb100644007.93 KB12e53e25eb9c0bb446896824e3b77ae27befb1c6910f6112cda33783651e38c2
bin/markers_in_region.rb100755001.41 KB29bd87d9d5a124e02100adc581f267b5013b7dee573d3163830064d4d8a45dc5
bin/mask_triads.rb100644005.77 KB238a6b1b430d8440c4f4521cdab22b8f1896fb980250fe3964d3c3c735ed20bf
bin/polymarker.rb1007550013.9 KBf7d68cfa80b26210e5e1e635f498d215dbf4932ab4cb4fd358398e1a4af2ccb4
bin/polymarker_capillary.rb1006440014.2 KB4199a16c0211edc430c66e97d8ae6a3ead6b65b66954fccc4771802cd104c735
bin/polymarker_deletions.rb1006440010.3 KB184a74298c8787b4169556214097ee577237ef45e572084e372ef3e5aecb475e
bin/snp_position_to_polymarker.rb100755003.18 KB2eb57000b527ea2c18beabc5c9f7292cd9aa18ebd4fffdb93c0fb920e8feb38b
bin/snps_between_bams.rb100755002.78 KB7d1fc8777d6be2d91b39e6fc404b658e8ea6f0b4bd0d7874b2653c058d834f3e
bin/tag_stats.rb100644001.89 KB1c55167800e96829ab53b7b23443b4f61c63c6b7736efd5962a899b5fc008d3e
bin/vcfLineToTable.rb100644001.32 KBe0014fd7e03a4b9c4024e3f333b144076abb83ef91a3b954f8c2d36c74cd6d21
bin/vcfToPolyMarker.rb100644002.11 KB86ec8371b7b17b56a19d85a5e81ec4a37392357250f78b21f5ac1a27a78f8f7f
bio-polymarker.gemspec100644009.55 KB9500de7522c39b9a46a0e693431705700630cd14657b857e86071ca7d42f7517
conf/defaults.rb1007550075 Bytesc94dcb19c2b8cc8a2523b0a0e83f5f423df1c6c05aaa3f30944be3fb85dffa8d
conf/primer3_config/dangle.dh10064400373 Bytesc88f09dc5be829a130ccbb00f142e4ff89259411355262911799d0be0571d4aa
conf/primer3_config/dangle.ds10064400548 Bytes167c423714d0d350cfb8df5439a7621c0e34033b1f6b87c1cb58760d75bdb529
conf/primer3_config/interpretations/dangle_i.dh10064400994 Bytes99a44aeafad0dcb218e1ff57ffb7fd970b0aa5290106fb49883d29c45e50acbf
conf/primer3_config/interpretations/dangle_i.ds100644001017 Bytesbd25da7ce70f2dd808ca37a660356ccc5037b5966c9847a5e323f89f3ae2f565
conf/primer3_config/interpretations/loops_i.dh100644001.81 KB1c8d670ed0460cf6bc1b3d24d45254d9d94a757ffd37d0990205a44ff4217cb8
conf/primer3_config/interpretations/loops_i.ds10064400699 Bytese45c50c5f5b1e2f919869748bb061769b270c88f535b743a1d59ae9812d583ad
conf/primer3_config/interpretations/stack_i.dh100644002.6 KB132a4d7ad024541798c85e5734f656016edceb573cd7418728530cfd01741189
conf/primer3_config/interpretations/stack_i.ds100644002.54 KB46758d54aa51769f5de5a8bbb9040e953876ad027f7035650c9ab34ae2166548
conf/primer3_config/interpretations/stackmm_i_mm.dh100644002.69 KBb16381b288c89444b7c49fdcd7085d51dbd516d2853daf47fcebf6fb1466bfd8
conf/primer3_config/interpretations/stackmm_i_mm.ds100644002.58 KBd517bafb2e8b155d7060f198b2ac0bdb75e772bb0cdafbebbe23cc33a1c9b99d
conf/primer3_config/interpretations/tetraloop_i.dh10064400815 Bytes12654f470a00a5c7fa8465bf4a3c80312d9a3c17fca3fc3a7470c77eefd80afb
conf/primer3_config/interpretations/tetraloop_i.ds10064400873 Bytes6cdc193ae592835b12d2dbb0737a45e4d75fe34db28eefb2c8824c201fd3420d
conf/primer3_config/interpretations/triloop_i.dh10064400194 Bytes2b0b7cd6f2aff3c827a82d580cb2c928491de4130a6e9829106088236c16eb72
conf/primer3_config/interpretations/triloop_i.ds10064400160 Bytes53723b643a7d4eba23b7114edb6b72cb342d7bcc58328c3ba8f72a802fd10b76
conf/primer3_config/interpretations/tstack2_i.dh100644002.43 KB0e590e2b3207c13649fca1f27f48af8448e83a0b41bdd9c64957eae5eea35b74
conf/primer3_config/interpretations/tstack2_i.ds100644002.66 KBd2e8f5a9358cf8cd6a9355c8fdafa29cbd5028d6cdd3a3a26ddc11b391a49485
conf/primer3_config/interpretations/tstack_i.dh100644002.08 KB656199e69136c36bf5bd907d35fd2e02db557f5371f451047650d227de9a5fa3
conf/primer3_config/interpretations/tstack_i.ds100644002.41 KBaf30e7b8df1dda68c4932aa899e7e990ba758de836147f7542aa5d4cb773b7f8
conf/primer3_config/interpretations/tstack_tm_inf_i.dh100644002.08 KB656199e69136c36bf5bd907d35fd2e02db557f5371f451047650d227de9a5fa3
conf/primer3_config/interpretations/tstack_tm_inf_i.ds100644002.44 KB3f650a2d7ff7bd9d408e51f339c984ef2382b487f22647fa79769c56807ca486
conf/primer3_config/loops.dh10064400441 Bytes2d26b74caf8e80ece50b659acb4bd547812ead5143ffb35338428637368a3087
conf/primer3_config/loops.ds10064400692 Bytes68b67437eb75485231ab8792e58b1e7ca488b81d4640b61d40f0d1402291da90
conf/primer3_config/stack.dh100644001.03 KBc7305ddec2c690990358e207f5a6beb118283a74ce711a4aa68f89b788fa7c27
conf/primer3_config/stack.ds100644001.03 KB4def88bee217039784583159a69ea50cab4e9ea5b82132f7938dfd2866d0524e
conf/primer3_config/stackmm.dh100644001.12 KBec457186fee79b686a74b464881c5c6a9c158c258957ff2b372f5e6d62fedf51
conf/primer3_config/stackmm.ds100644001.08 KB0701ef016c5f5c4f484c49acec1c679e35778206520ba1c7690dce8b550df6d4
conf/primer3_config/tetraloop.dh10064400913 Bytesa4b9e1ca1015f89254fad5cb63d9ffcde6e996618ee1a7d417ee032a16613f4f
conf/primer3_config/tetraloop.ds10064400824 Bytes36f1b2927f2fabbc7135a9bdfe9c415efcbf10951c680a92baa331e7cb408ebc
conf/primer3_config/triloop.dh10064400192 Bytes71aa016d8c94371e715dbcc161f6884a6243d0c050932bfadc446168aecc3c2a
conf/primer3_config/triloop.ds10064400128 Bytes117eed025fbd50f0543083f5bd2db4edf9b54df748f6a1b57caa271cc9ab409e
conf/primer3_config/tstack.dh10064400890 Bytes12821532c4408bf12f81b4fa3deb62452926506902c925134b72fb3cdeb5c5cf
conf/primer3_config/tstack2.dh10064400950 Bytes35fa4a70818c13bd4b3aeea40322368cba3af19192dcef92d28d17f881434ee8
conf/primer3_config/tstack2.ds100644001.16 KB9040da0c0d0800993fe2dbc5d365879f3ef026b96dd050e3a4495738d12a2082
conf/primer3_config/tstack_tm_inf.ds100644001.13 KB181c3175ba570c433ce7a345043003259a510f5960b41beb1c96ba73658e60ba
lib/bio-polymarker.rb10075500656 Bytes6a1a084bc45f913d772bcf6547b8a190e9a54522513a2dd5e90e8b3daa73aa22
lib/bio/BFRTools.rb1007550016 KB9c8533452075cfad0b73a15dd2ed0cc3ba55c93613082ce7ae896caff48912f7
lib/bio/BIOExtensions.rb100755002.96 KB277a7bcd222082da3f6b010e678acb1d8fc75c84ee68c2a89708cc9f9d6f9982
lib/bio/PolyploidTools/ChromosomeArm.rb100644001.61 KB58b76901162308fd4eb973de739b8b66d709a3a35a745143ce17315eca3772f6
lib/bio/PolyploidTools/ExonContainer.rb100644007.9 KB3ec959c9dcfb197a16bc5532e4ffdcb0191a1519d0eed6abb10df4b2f2f1612b
lib/bio/PolyploidTools/Marker.rb100644004.51 KB0c6206dc238aad1c4036b90b3c8002d953909b2c5575a09eb1c7b157fecbb12f
lib/bio/PolyploidTools/Mask.rb100644002.67 KB456dbafa7096ff1e3e10ac09bfb07b0be6c3be4f339e38180802b2d7de0d7098
lib/bio/PolyploidTools/NoSNPSequence.rb100644009.86 KB1c8c8f76ac65e85317b26fc228b638b92eaa793c508890e175ccf28b5acd6ef1
lib/bio/PolyploidTools/PrimerRegion.rb100644001.07 KBdb74884b4310791f1019309e5e793e251c4bc95a5ffa477b8e533c3822406c4e
lib/bio/PolyploidTools/SNP.rb1006440027.3 KB0ccd3f6216cd327fa94545b64b1b56a09483cc0e76350e986721792347d04eea
lib/bio/PolyploidTools/SNPMutant.rb100644002.53 KBc42ffb08a8b2d01d6fbd59e8f2e98f4987156807a2c2a17faea66abd3467b2e3
lib/bio/PolyploidTools/SNPSequence.rb100755001.5 KBc829abb0865f3bded21b215f18c424e5f90c29e8aa66923f09189db9fcfb3ea6
lib/bio/db/blast.rb100644002.28 KB36793d0e4831dc11b971e74245fd06ee5d21ef25fd87433035f70fe716a1fed9
lib/bio/db/exonerate.rb100644009.92 KBb48ea7f2612a6bf1aea606e4c35f413d9ece3be8a6a5b6cfd89cd25152387a00
lib/bio/db/primer3.rb1006440024.1 KB51950a19b0abdf0f21f94956693d713b3aed6ef52f9fb8792df7aaf03f802354
test/data/7B_amplicon_test.fa10064400629 Bytes7c3e8f427a037476d62c1173b3dbeb7653ff5b34e591378b4e0858a925dc40b4
test/data/7B_amplicon_test.fa.fai1006440029 Bytesb035b8dcbdd8713cad7fa65b41af1c95c3306ad180444c1878d3edb2462ba181
test/data/7B_amplicon_test_reference.fa100644006.28 KB996e445ea0d926e6c8f20df87ef8306786d5c72a31bb678e00c8a72826afb775
test/data/7B_amplicon_test_reference.fa.fai1006440063 Bytesf846b0a3fcde3fb0a8833460f89521a3cc1c49bae11aeb03071109ac41ee6410
test/data/7B_marker_test.txt10064400125 Bytes07acecb2f656c84c4a11b251c128e41d6d88ad988597a08be3a31f92ce50e586
test/data/BS00068396_51.fa10064400116 Bytes95524391aca3f9708896eb6ddaab1f4ada0d3af20c1af34bd02f92821142e698
test/data/BS00068396_51_blast.tab100644001.06 KB2cf5895b9176691ed6882c9fa16b24247719b95746301e516ce0f9565d123a15
test/data/BS00068396_51_contigs.aln1006440089.7 KB4c8e9e4180a4054c3f3028b0dd9a974e172065f9f8fc23647d93ca215e709fb6
test/data/BS00068396_51_contigs.dnd1006440099 Bytes829fd3153a076ceb4b9e84b38c94b3d9cd5a2abc82d11ff519a8cc0081915c7d
test/data/BS00068396_51_contigs.fa1006440033.8 KB43c02147fa5bfd7868cebb6be9893be60d95e55108abd902b83fb2195cd7131b
test/data/BS00068396_51_contigs.fa.fai10064400131 Bytes8b97bfa76861281dbcf2364d33cbe985a35cbaa653393856b0c03b3a58dd4ab7
test/data/BS00068396_51_contigs.fa.nhr10064400430 Bytesef005af6138b415f9ded07d29698d04d43a0ed13c3c9f30c3cb1b654844f29ee
test/data/BS00068396_51_contigs.fa.nin10064400148 Bytes88b42614643a4fe9cacf6d247da9987c851a4d8bfc4d84df8619737c8559b177
test/data/BS00068396_51_contigs.fa.nsq100644008.41 KB4db989f7cfc63fe4582d179f843b3c3fde7f4ac0d687c071cae8ce27bfc87cf5
test/data/BS00068396_51_contigs.nhr10064400430 Bytesef005af6138b415f9ded07d29698d04d43a0ed13c3c9f30c3cb1b654844f29ee
test/data/BS00068396_51_contigs.nin10064400140 Bytes22d5291e58a182bc285bcb3b68f764a267d5de289b585fff9cafbb14be862867
test/data/BS00068396_51_contigs.nsq100644008.41 KB4db989f7cfc63fe4582d179f843b3c3fde7f4ac0d687c071cae8ce27bfc87cf5
test/data/BS00068396_51_exonerate.tab10064400697 Bytese076d8a290ee5d66715dc2896f146ac5fc1fedd600ab7ed3c85ef5e0b09ef789
test/data/BS00068396_51_for_polymarker.txt10064400123 Bytes665a9571f2614c7a24ee3f3480a3a3c03acf9c6a15241b3ee1cca2aabc9daed2
test/data/BS00068396_51_genes.txt10064400601 Bytesfb292d36aa82110550f10c5670d5749b5b0039de42db364ba77c87d5b5bfa59e
test/data/IWGSC_CSS_1AL_scaff_1455974.fa100644006.64 KBbe95225854925d158ba65a9f076c5f00dbe6b9e9c4b84afa458df1036fbe0fdb
test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa10064400137 KB17e692215b28fdf9aca159f08e2bed41f86d8f5ffe70707490583f3dfdd2cc46
test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa.fai10064400504 Bytes1a9338e11fced4c91aa48e93cb1fd3a5a548ef12962b466aeb57f4c03236b64c
test/data/LIB1716.bam10064400902 KB29964408c48e148034de19395ae63ee9f78187f16a565930499f7b455e780f4f
test/data/LIB1716.bam.bai10064400445 KB130cb43b2f0a5f9af34f3a9764532e77efd2e227085724946f765a73717f9244
test/data/LIB1719.bam10064400913 KB1f0c5ecfdc63ce1a00ecfbb23aac7d82f5433a0851893d8635a114583b3bdb82
test/data/LIB1719.bam.bai10064400445 KB220c0797c00f9611d2ffb72f01b1d4e3aa8dddd59045490e2039cc158db9dbb2
test/data/LIB1721.bam100644001.21 MB0695a02dc50194ac91bb18e88d7f056c2c69f0cac9f40ec4e96384ea1531839d
test/data/LIB1721.bam.bai10064400445 KB857fd746886a4e420b0994957a8ca477332cb72f5ff2c854b4871bccf90f3dfe
test/data/LIB1722.bam100644001.06 MB05d86de65902d2876e4e624d8e2e8b070fd2766bd09f48fe72a88c8b9acb49a0
test/data/LIB1722.bam.bai10064400445 KB35993aa1936c11ecb7440083c53982f5e6732adb038617a0aa2aa7889c3ade4a
test/data/PST130_7067.csv1006440025 Bytes9ea0bb2fd0c87fb3ee06980116d5ab56fa6ba2e44729959f8f28f3b9ec1be56a
test/data/PST130_7067.fa1006440025.5 KB2aabdee9d1d1b22ce7855789e5a0572ff3137e25d1bdc6208ed47b53282e8549
test/data/PST130_7067.fa.fai1006440033 Bytes0605a2b111ec8ce97f006ba21d6c44061532a91aece67b55d3822dffb8a2e949
test/data/PST130_7067.fa.ndb1006440020 KB277c14bd37ec11a3a5d54e42186e6e78ba23ad04aa9a302d28b4311773cb14b3
test/data/PST130_7067.fa.nhr1006440074 Bytesef91d341cdee35a407f3bd3a5699849a382fc9fccd5958123684af7959f1488e
test/data/PST130_7067.fa.nin10064400128 Bytesbeaf51afdfccf62af450712c1d0862b4ce713288a60dca6d5c216f323ac4a599
test/data/PST130_7067.fa.not1006440020 Bytese2099cbf3445ac30a98dcc86f0b899eac91fd0a23cf2825f48bd01daadee347a
test/data/PST130_7067.fa.nsq100644006.37 KB5a9a61cc43c9cb07066f4b1ee64d64499bbc546b96c35bfd1d52c70c383c2e90
test/data/PST130_7067.fa.ntf1006440016 KBcdc6e8bf141afb9e16cb3e4277b1219302b5175a70c72e6c5daeeca999f22009
test/data/PST130_7067.fa.nto100644008 Bytes7c9fa136d4413fa6173637e883b6998d32e1d675f88cddff9dcbcf331820f4b8
test/data/PST130_reverse_primer.csv1006440025 Bytes9ea0bb2fd0c87fb3ee06980116d5ab56fa6ba2e44729959f8f28f3b9ec1be56a
test/data/S22380157.fa100644001.01 KBaa7e00f773d5998455a950967266756a2430813d5196172d2ada5b6c75d64420
test/data/S22380157.fa.fai1006440034 Bytes64cb493d22fd330242c114c6e966393ee41bc95ebaf84e763b8c4414048b5e08
test/data/S22380157.vcf1006440011.6 KB0b39ea309d18f5ed0d138f4537241f635c18443fc5d685536f75d4a8709bb5ad
test/data/S58861868/LIB1716.bam10064400168 KBa1b82903a7564ecf4c112bde09e41957f2d55ab141f3e5e6006dc7cb7aa8cb99
test/data/S58861868/LIB1716.sam10075500218 KB40398829a337b06c2c5754a4fe55eabac6c842a0579d518a117a313fdc607448
test/data/S58861868/LIB1719.bam10064400208 KBc49b98caf221a6d7b7ea69eea3df32291b3dfe24da5e263e492fec572d799b77
test/data/S58861868/LIB1719.sam10075500269 KB6c2da3164e4ed021694ee547b97d22e9a7f8370b02d311d142f201e753e29afe
test/data/S58861868/LIB1721.bam10064400448 KBe9491ada346601d35125159d04c9fe2a61375ee9a3f05fae3ce80045ac2cd493
test/data/S58861868/LIB1721.sam10075500574 KB122cc003308b367ed3345cf17f4e63a77b9f38d938aef93870cf8c27f9eda40d
test/data/S58861868/LIB1722.bam10064400322 KBe45703d795fc134f7c688d26b6e3cb22bc18aec87d08f0e1bb8fcf4c0ac368ae
test/data/S58861868/LIB1722.sam10075500415 KB188fa5123e202bf077959cac2315f2454f4980bed6619591ac7179f04b4b85d9
test/data/S58861868/S58861868.fa10075500879 Bytese62ecd37d7e9f787dd1bdf78618efcdbb1d4b9d264c9c3b588a7851840d815a4
test/data/S58861868/S58861868.fa.fai1006440033 Bytes7c244d538618d961cd3a4039b2e9914b46fb4c917174804494a3268031c6d2fd
test/data/S58861868/S58861868.vcf1006440017.4 KBa7593fcc20b9f5a98f17e09e684da6d2cd22e16989e2cf28697559d2dc5a52df
test/data/S58861868/header.txt10064400379 Bytesbb6af2a4c35c11af4a17fef0e59b724c2a51c8f3d88ab2b4e05e3dc863ad814f
test/data/S58861868/merged.bam10064400329 KBe97f8cc2d841d3103342f0d6a3069b3398438c0a6835354d7fba684cd101c573
test/data/S58861868/merged_reheader.bam10064400329 KB72107d0ec995f9d01c4804224381c95adcf8616c93a95fbd793a48130f28788d
test/data/S58861868/merged_reheader.bam.bai1006440096 Bytesbcd2d887441c8613e1e86deb820854c10236a5d7d94cfcca96366b52e59dd51f
test/data/Test3Aspecific.csv10064400435 Bytes8ca8f8a5975f964ba31702e813b5a54f3431bf615cbfe2473a3684a745549f80
test/data/Test3Aspecific_contigs.fa1006440020.3 KBe20f31b1e9a237b38f2c54f1d38211b9ded34aaa5d0032eaed01501939b728c9
test/data/bfr_out_test.csv10064400480 Bytesaef9187e8dce312af3b08360e1c51779a2f71358118b4502de860039e0cb3c6b
test/data/chr1A_C1145499T/chr1A_C1145499T.csv10064400224 Bytes45083531a3290f89b198189a1154b0095b10d9fe13bbf1ca9448a42160a2f72f
test/data/chr1A_G540414846C/chr1A_G540414846C.csv10064400226 Bytes679cc1f5a6ad2fa7733996732e9c11dfa087539621c5b2b3a763f87a68b9ea5d
test/data/chr1A_G540414846C/chr1A_G540414846C.fa10064400220 Bytes9a4f0360c731c7ed6b3340168ffbe43dcacb34021a3ecf967d7a79b809fac71f
test/data/chr1A_T517634750C/chr1A_T517634750C.csv10064400226 Bytes3fee92c852db2e49c05879c16a4bc0ecd8fcb621ce2ff0ab8b6d6a62f8898e77
test/data/chr2D_C112180134A/chr2D_C112180134A.csv10064400226 Bytesa524a6de25c1b66db88a370d1484da9ad5c3882620a3a9abf72b96919d521b2e
test/data/chr4D_C14473543T/chr4D_C14473543T.csv10064400226 Bytesf535121d077a6ada32add4cd05e6fc7b7462fb2b66ee7a53bc0764a82d204be0
test/data/chr4D_C14473543T/chr4D_C14473543T.fa10064400219 Bytesbe153ba5138936fd151c669f776ff72576c8963fb22e3898739f2e0f99d90afc
test/data/headerMergeed.txt10064400379 Bytes05c2c4100ca15f39384ecd07c5a28c9a21359ac3a6b8586433bb787964571a7a
test/data/headerS22380151006440033 Bytes3e2c61b540db1179ea0145b89ac217c076daf99d6df2fdffe305ded3cf7a73b5
test/data/mergedLibs.bam100644001.57 MBd8ecad55f35a564293e4ec8b9cf263d63a082e0225a0bfa099e5367fb336b4a6
test/data/mergedLibsReheader.bam100644001.23 MBf22bc559f8636577322f8256dcd0c7c9424db338d2802143c6431467315d536e
test/data/mergedLibsSorted.bam10064400420 KBc96576b9e1ebe869be7b9a1e956c1667978771677370089cec2bd56e55210a36
test/data/mergedLibsSorted.bam.bai1006440096 Bytesa38fa96c14d9f34d166e8f183f8eaf927c035d8c6d75ae26bb8f7ae2912e5deb
test/data/patological_cases5D.csv10064400119 Bytes7480e05ccf6d43bd6a4c6b91f172d79c576e6b784479b598789cf0b734c9f5b6
test/data/primer_3_input_header_test10064400132 Bytes8e4c602056f89c3f6515aff152570ea8fbea3619545181256af49c0c95b91742
test/data/short_primer_design_test.csv100644002.09 KBaf4ff3547cdff7579d6d11342a48be5c263421fc87eae543b6436f3b3a2ee66a
test/data/some_tests/some_tests.csv1006440025.5 KB7546e5dedcb8f664306a5a9d30fefbb449de2d1fdcb90e1c5f4eb671e3290a9d
test/data/test_from_mutant.csv10064400134 Bytes109183798d93226bbd27de4c816af8ac90543849d704b1e5d5ebfb8dc8d61c58
test/data/test_iselect.csv1007550024.5 KB6576d5ec069777b48912468bc0ad2eda7cda1bd02843a2973bdef1dc841ba052
test/data/test_iselect_reference.fa100755008.38 MB0d741cdfe85b82a233e9bdc0a44f4bd13371263001d1249b9f1cf1030286c63e
test/data/test_iselect_reference.fa.fai1006440047.3 KB8e1afbbadcd23885b42c6e2d826735a87aeb22c3ecc8d44721105d1218dcb17e
test/data/test_primer3_error.csv10064400521 Bytesefd3e5cc1ad6e93a391bc9b8f9154d7eae6935283b4bb40d1a14e2371684a814
test/data/test_primer3_error_contigs.fa1006440024.4 KB02b76b0a2870e0b1ffa0eeff2416a871b624fa37227fa07360c4727f2467d24d
test/test_bfr.rb100755006.3 KB1b14e7e117860f9ed82688beb2696d319aa0b37ed82c85858dcb68e5f4eece5a
test/test_blast.rb100644001.33 KB445387ec40a027999fb448585acd4f28ef6b04a719e0844b9ee61bfddaf840da
test/test_exon_container.rb10064400444 Bytesdceaa7622af03d9ae205da9f711286e11bc2c716f2bce97fca3671e92294b6ba
test/test_exonearate.rb100644001.51 KBd769061d2ea90686e8d0c9936f3990a8bc603d1b7fc13e2900996eee8d3a4fd2
test/test_integration.rb100644002.69 KB4e4620fd6092f6da1b23587d5fed44328474afff3c7b3fb01cf2e99e5864c324
test/test_snp_parsing.rb100644007.09 KBca47ad31bc6e9da0ce349cc89a6433e46fbb8bd7b12b8184fa842121d1261716
test/test_wrong_selection.sh10075500273 Bytes516084754f41452393bfc67ffef31a287eaf0453349b0a452393b4f1881f3efc