# -*- encoding: utf-8 -*-
# stub: pets 0.1.2 ruby lib

Gem::Specification.new do |s|
  s.name = "pets".freeze
  s.version = "0.1.2".freeze

  s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
  s.require_paths = ["lib".freeze]
  s.authors = ["Elena Rojano, Pedro Seoane".freeze]
  s.date = "2019-10-24"
  s.description = "PETS suite includes three different tools. CohortAnalyzer performs the calculation of several statistics that gives an overview of a cohort of patients to analyse. Reg2Phen uses associations between pathological phenotypes and regions of the genome (these associations can be calculated from the cohort of patients if they include genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find, for a given genomic region, which pathological phenotypes have been associated with that region. The third tool, Phen2Reg, is a predictor that using the same associations as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological phenotypes observed in a patient.".freeze
  s.email = ["elenarojano@uma.es, seoanezonjic@uma.es".freeze]
  s.files = [".gitignore".freeze, ".rspec".freeze, ".travis.yml".freeze, "Gemfile".freeze, "LICENSE.txt".freeze, "README.md".freeze, "Rakefile".freeze, "bin/area_under_curve_pr.rb".freeze, "bin/association_metrics_average.rb".freeze, "bin/coPatReporter.rb".freeze, "bin/console".freeze, "bin/fmeasure_index.rb".freeze, "bin/get_PR_values.rb".freeze, "bin/get_clusters.R".freeze, "bin/get_network_nodes.rb".freeze, "bin/lines.R".freeze, "bin/merge_by_cluster.rb".freeze, "bin/merge_pairs.rb".freeze, "bin/paco_translator.rb".freeze, "bin/phen2reg.rb".freeze, "bin/phen2reg_predictor_check.rb".freeze, "bin/plot_area.R".freeze, "bin/plot_boxplot.R".freeze, "bin/plot_density.R".freeze, "bin/plot_scatterplot.R".freeze, "bin/reg2phen.rb".freeze, "bin/region_to_patients_generator.rb".freeze, "bin/relate_CI_to_association_value.rb".freeze, "bin/setup".freeze, "bin/standardize_scores.R".freeze, "bin/xyplot_graph.R".freeze, "external_data/biosystems_gene.gz".freeze, "external_data/bsid2info.gz".freeze, "external_data/chromosome_sizes_hg19.txt".freeze, "external_data/gene_data.gz".freeze, "external_data/gene_data_with_pathways.gz".freeze, "external_data/gene_location.gz".freeze, "external_data/hp.obo".freeze, "external_data/remove".freeze, "lib/pets.rb".freeze, "lib/pets/coPatReporterMethods.rb".freeze, "lib/pets/generalMethods.rb".freeze, "lib/pets/phen2reg_methods.rb".freeze, "lib/pets/version.rb".freeze, "pets.gemspec".freeze, "templates/cohort_report.erb".freeze, "templates/patient_report.erb".freeze]
  s.homepage = "https://bitbucket.org/elenarojano/reg2phen/src/master/bin/reg2phen.rb".freeze
  s.licenses = ["MIT".freeze]
  s.rubygems_version = "3.5.10".freeze
  s.summary = "Suite with predictive tools.".freeze

  s.specification_version = 4

  s.add_development_dependency(%q<bundler>.freeze, ["~> 2.0".freeze])
  s.add_development_dependency(%q<rake>.freeze, ["~> 10.0".freeze])
  s.add_development_dependency(%q<rspec>.freeze, ["~> 3.0".freeze])
  s.add_runtime_dependency(%q<statistics2>.freeze, [">= 0".freeze])
  s.add_runtime_dependency(%q<terminal-table>.freeze, [">= 0".freeze])
  s.add_runtime_dependency(%q<report_html>.freeze, [">= 0".freeze])
end