# -*- encoding: utf-8 -*- # stub: bio 2.0.3 ruby lib Gem::Specification.new do |s| s.name = "bio".freeze s.version = "2.0.3".freeze s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version= s.require_paths = ["lib".freeze] s.authors = ["BioRuby project".freeze] s.date = "2021-11-05" s.description = "BioRuby is a library for bioinformatics (biology + information science).".freeze s.email = "staff@bioruby.org".freeze s.extra_rdoc_files = ["KNOWN_ISSUES.rdoc".freeze, "README.rdoc".freeze, "README_DEV.rdoc".freeze, "RELEASE_NOTES.rdoc".freeze, "doc/Changes-1.3.rdoc".freeze, "doc/RELEASE_NOTES-1.4.0.rdoc".freeze, "doc/RELEASE_NOTES-1.4.1.rdoc".freeze, "doc/RELEASE_NOTES-1.4.2.rdoc".freeze, "doc/RELEASE_NOTES-1.4.3.rdoc".freeze, "doc/RELEASE_NOTES-1.5.0.rdoc".freeze] s.files = [".travis.yml".freeze, "BSDL".freeze, "COPYING".freeze, "COPYING.ja".freeze, "ChangeLog".freeze, "GPL".freeze, "Gemfile".freeze, "KNOWN_ISSUES.rdoc".freeze, "LEGAL".freeze, "LGPL".freeze, "README.rdoc".freeze, "README_DEV.rdoc".freeze, "RELEASE_NOTES.rdoc".freeze, "Rakefile".freeze, "appveyor.yml".freeze, "bioruby.gemspec".freeze, "bioruby.gemspec.erb".freeze, "doc/ChangeLog-1.4.3".freeze, "doc/ChangeLog-1.5.0".freeze, "doc/ChangeLog-before-1.3.1".freeze, "doc/ChangeLog-before-1.4.2".freeze, "doc/Changes-0.7.rd".freeze, "doc/Changes-1.3.rdoc".freeze, "doc/RELEASE_NOTES-1.4.0.rdoc".freeze, "doc/RELEASE_NOTES-1.4.1.rdoc".freeze, "doc/RELEASE_NOTES-1.4.2.rdoc".freeze, "doc/RELEASE_NOTES-1.4.3.rdoc".freeze, "doc/RELEASE_NOTES-1.5.0.rdoc".freeze, "doc/Tutorial.rd".freeze, "doc/Tutorial.rd.html".freeze, "doc/Tutorial.rd.ja".freeze, "doc/Tutorial.rd.ja.html".freeze, "doc/bioruby.css".freeze, "etc/bioinformatics/seqdatabase.ini".freeze, "gemfiles/Gemfile.travis-jruby1.8".freeze, "gemfiles/Gemfile.travis-jruby1.9".freeze, "gemfiles/Gemfile.travis-rbx".freeze, "gemfiles/Gemfile.travis-ruby1.8".freeze, "gemfiles/Gemfile.travis-ruby1.9".freeze, "gemfiles/Gemfile.windows".freeze, "gemfiles/modify-Gemfile.rb".freeze, "gemfiles/prepare-gemspec.rb".freeze, "lib/bio.rb".freeze, "lib/bio/alignment.rb".freeze, "lib/bio/appl/bl2seq/report.rb".freeze, "lib/bio/appl/blast.rb".freeze, "lib/bio/appl/blast/format0.rb".freeze, "lib/bio/appl/blast/format8.rb".freeze, "lib/bio/appl/blast/genomenet.rb".freeze, "lib/bio/appl/blast/ncbioptions.rb".freeze, "lib/bio/appl/blast/remote.rb".freeze, "lib/bio/appl/blast/report.rb".freeze, "lib/bio/appl/blast/rexml.rb".freeze, "lib/bio/appl/blast/rpsblast.rb".freeze, "lib/bio/appl/blast/wublast.rb".freeze, "lib/bio/appl/blat/report.rb".freeze, "lib/bio/appl/clustalw.rb".freeze, "lib/bio/appl/clustalw/report.rb".freeze, "lib/bio/appl/emboss.rb".freeze, "lib/bio/appl/fasta.rb".freeze, "lib/bio/appl/fasta/format10.rb".freeze, "lib/bio/appl/gcg/msf.rb".freeze, "lib/bio/appl/gcg/seq.rb".freeze, "lib/bio/appl/genscan/report.rb".freeze, "lib/bio/appl/hmmer.rb".freeze, "lib/bio/appl/hmmer/report.rb".freeze, "lib/bio/appl/iprscan/report.rb".freeze, "lib/bio/appl/mafft.rb".freeze, "lib/bio/appl/mafft/report.rb".freeze, "lib/bio/appl/meme/mast.rb".freeze, "lib/bio/appl/meme/mast/report.rb".freeze, "lib/bio/appl/meme/motif.rb".freeze, "lib/bio/appl/muscle.rb".freeze, "lib/bio/appl/paml/baseml.rb".freeze, "lib/bio/appl/paml/baseml/report.rb".freeze, "lib/bio/appl/paml/codeml.rb".freeze, "lib/bio/appl/paml/codeml/rates.rb".freeze, "lib/bio/appl/paml/codeml/report.rb".freeze, "lib/bio/appl/paml/common.rb".freeze, "lib/bio/appl/paml/common_report.rb".freeze, "lib/bio/appl/paml/yn00.rb".freeze, "lib/bio/appl/paml/yn00/report.rb".freeze, "lib/bio/appl/phylip/alignment.rb".freeze, "lib/bio/appl/phylip/distance_matrix.rb".freeze, "lib/bio/appl/probcons.rb".freeze, "lib/bio/appl/psort.rb".freeze, "lib/bio/appl/psort/report.rb".freeze, "lib/bio/appl/pts1.rb".freeze, "lib/bio/appl/sim4.rb".freeze, "lib/bio/appl/sim4/report.rb".freeze, "lib/bio/appl/sosui/report.rb".freeze, "lib/bio/appl/spidey/report.rb".freeze, "lib/bio/appl/targetp/report.rb".freeze, "lib/bio/appl/tcoffee.rb".freeze, "lib/bio/appl/tmhmm/report.rb".freeze, "lib/bio/command.rb".freeze, "lib/bio/compat/features.rb".freeze, "lib/bio/compat/references.rb".freeze, "lib/bio/data/aa.rb".freeze, "lib/bio/data/codontable.rb".freeze, "lib/bio/data/na.rb".freeze, "lib/bio/db.rb".freeze, "lib/bio/db/aaindex.rb".freeze, "lib/bio/db/embl/common.rb".freeze, "lib/bio/db/embl/embl.rb".freeze, "lib/bio/db/embl/embl_to_biosequence.rb".freeze, "lib/bio/db/embl/format_embl.rb".freeze, "lib/bio/db/embl/sptr.rb".freeze, "lib/bio/db/embl/swissprot.rb".freeze, "lib/bio/db/embl/trembl.rb".freeze, "lib/bio/db/embl/uniprot.rb".freeze, "lib/bio/db/embl/uniprotkb.rb".freeze, "lib/bio/db/fantom.rb".freeze, "lib/bio/db/fasta.rb".freeze, "lib/bio/db/fasta/defline.rb".freeze, "lib/bio/db/fasta/fasta_to_biosequence.rb".freeze, "lib/bio/db/fasta/format_fasta.rb".freeze, "lib/bio/db/fasta/format_qual.rb".freeze, "lib/bio/db/fasta/qual.rb".freeze, "lib/bio/db/fasta/qual_to_biosequence.rb".freeze, "lib/bio/db/fastq.rb".freeze, "lib/bio/db/fastq/fastq_to_biosequence.rb".freeze, "lib/bio/db/fastq/format_fastq.rb".freeze, "lib/bio/db/genbank/common.rb".freeze, "lib/bio/db/genbank/ddbj.rb".freeze, "lib/bio/db/genbank/format_genbank.rb".freeze, "lib/bio/db/genbank/genbank.rb".freeze, "lib/bio/db/genbank/genbank_to_biosequence.rb".freeze, "lib/bio/db/genbank/genpept.rb".freeze, "lib/bio/db/genbank/refseq.rb".freeze, "lib/bio/db/gff.rb".freeze, "lib/bio/db/go.rb".freeze, "lib/bio/db/kegg/brite.rb".freeze, "lib/bio/db/kegg/common.rb".freeze, "lib/bio/db/kegg/compound.rb".freeze, "lib/bio/db/kegg/drug.rb".freeze, "lib/bio/db/kegg/enzyme.rb".freeze, "lib/bio/db/kegg/expression.rb".freeze, "lib/bio/db/kegg/genes.rb".freeze, "lib/bio/db/kegg/genome.rb".freeze, "lib/bio/db/kegg/glycan.rb".freeze, "lib/bio/db/kegg/keggtab.rb".freeze, "lib/bio/db/kegg/kgml.rb".freeze, "lib/bio/db/kegg/module.rb".freeze, "lib/bio/db/kegg/orthology.rb".freeze, "lib/bio/db/kegg/pathway.rb".freeze, "lib/bio/db/kegg/reaction.rb".freeze, "lib/bio/db/lasergene.rb".freeze, "lib/bio/db/litdb.rb".freeze, "lib/bio/db/medline.rb".freeze, "lib/bio/db/nbrf.rb".freeze, "lib/bio/db/newick.rb".freeze, "lib/bio/db/nexus.rb".freeze, "lib/bio/db/pdb.rb".freeze, "lib/bio/db/pdb/atom.rb".freeze, "lib/bio/db/pdb/chain.rb".freeze, "lib/bio/db/pdb/chemicalcomponent.rb".freeze, "lib/bio/db/pdb/model.rb".freeze, "lib/bio/db/pdb/pdb.rb".freeze, "lib/bio/db/pdb/residue.rb".freeze, "lib/bio/db/pdb/utils.rb".freeze, "lib/bio/db/prosite.rb".freeze, "lib/bio/db/rebase.rb".freeze, "lib/bio/db/sanger_chromatogram/abif.rb".freeze, "lib/bio/db/sanger_chromatogram/chromatogram.rb".freeze, "lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb".freeze, "lib/bio/db/sanger_chromatogram/scf.rb".freeze, "lib/bio/db/soft.rb".freeze, "lib/bio/db/transfac.rb".freeze, "lib/bio/feature.rb".freeze, "lib/bio/io/das.rb".freeze, "lib/bio/io/fastacmd.rb".freeze, "lib/bio/io/fetch.rb".freeze, "lib/bio/io/flatfile.rb".freeze, "lib/bio/io/flatfile/autodetection.rb".freeze, "lib/bio/io/flatfile/bdb.rb".freeze, "lib/bio/io/flatfile/buffer.rb".freeze, "lib/bio/io/flatfile/index.rb".freeze, "lib/bio/io/flatfile/indexer.rb".freeze, "lib/bio/io/flatfile/splitter.rb".freeze, "lib/bio/io/hinv.rb".freeze, "lib/bio/io/ncbirest.rb".freeze, "lib/bio/io/pubmed.rb".freeze, "lib/bio/io/registry.rb".freeze, "lib/bio/io/togows.rb".freeze, "lib/bio/location.rb".freeze, "lib/bio/map.rb".freeze, "lib/bio/pathway.rb".freeze, "lib/bio/reference.rb".freeze, "lib/bio/sequence.rb".freeze, "lib/bio/sequence/aa.rb".freeze, "lib/bio/sequence/adapter.rb".freeze, "lib/bio/sequence/common.rb".freeze, "lib/bio/sequence/compat.rb".freeze, "lib/bio/sequence/dblink.rb".freeze, "lib/bio/sequence/format.rb".freeze, "lib/bio/sequence/format_raw.rb".freeze, "lib/bio/sequence/generic.rb".freeze, "lib/bio/sequence/na.rb".freeze, "lib/bio/sequence/quality_score.rb".freeze, "lib/bio/sequence/sequence_masker.rb".freeze, "lib/bio/tree.rb".freeze, "lib/bio/tree/output.rb".freeze, "lib/bio/util/color_scheme.rb".freeze, "lib/bio/util/color_scheme/buried.rb".freeze, "lib/bio/util/color_scheme/helix.rb".freeze, "lib/bio/util/color_scheme/hydropathy.rb".freeze, "lib/bio/util/color_scheme/nucleotide.rb".freeze, "lib/bio/util/color_scheme/strand.rb".freeze, "lib/bio/util/color_scheme/taylor.rb".freeze, "lib/bio/util/color_scheme/turn.rb".freeze, "lib/bio/util/color_scheme/zappo.rb".freeze, "lib/bio/util/contingency_table.rb".freeze, "lib/bio/util/restriction_enzyme.rb".freeze, "lib/bio/util/restriction_enzyme/analysis.rb".freeze, "lib/bio/util/restriction_enzyme/analysis_basic.rb".freeze, "lib/bio/util/restriction_enzyme/cut_symbol.rb".freeze, "lib/bio/util/restriction_enzyme/dense_int_array.rb".freeze, "lib/bio/util/restriction_enzyme/double_stranded.rb".freeze, "lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb".freeze, "lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb".freeze, "lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb".freeze, "lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb".freeze, "lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb".freeze, "lib/bio/util/restriction_enzyme/enzymes.yaml".freeze, "lib/bio/util/restriction_enzyme/range/cut_range.rb".freeze, "lib/bio/util/restriction_enzyme/range/cut_ranges.rb".freeze, "lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb".freeze, "lib/bio/util/restriction_enzyme/range/sequence_range.rb".freeze, "lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb".freeze, "lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb".freeze, "lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb".freeze, "lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb".freeze, "lib/bio/util/restriction_enzyme/single_strand.rb".freeze, "lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb".freeze, "lib/bio/util/restriction_enzyme/single_strand_complement.rb".freeze, "lib/bio/util/restriction_enzyme/sorted_num_array.rb".freeze, "lib/bio/util/restriction_enzyme/string_formatting.rb".freeze, "lib/bio/util/sirna.rb".freeze, "lib/bio/version.rb".freeze, "sample/any2fasta.rb".freeze, "sample/benchmark_clustalw_report.rb".freeze, "sample/biofetch.rb".freeze, "sample/color_scheme_aa.rb".freeze, "sample/color_scheme_na.rb".freeze, "sample/demo_aaindex.rb".freeze, "sample/demo_aminoacid.rb".freeze, "sample/demo_bl2seq_report.rb".freeze, "sample/demo_blast_report.rb".freeze, "sample/demo_codontable.rb".freeze, "sample/demo_das.rb".freeze, "sample/demo_fasta_remote.rb".freeze, "sample/demo_fastaformat.rb".freeze, "sample/demo_genbank.rb".freeze, "sample/demo_genscan_report.rb".freeze, "sample/demo_gff1.rb".freeze, "sample/demo_go.rb".freeze, "sample/demo_hmmer_report.rb".freeze, "sample/demo_kegg_compound.rb".freeze, "sample/demo_kegg_drug.rb".freeze, "sample/demo_kegg_genome.rb".freeze, "sample/demo_kegg_glycan.rb".freeze, "sample/demo_kegg_orthology.rb".freeze, "sample/demo_kegg_reaction.rb".freeze, "sample/demo_litdb.rb".freeze, "sample/demo_locations.rb".freeze, "sample/demo_ncbi_rest.rb".freeze, "sample/demo_nucleicacid.rb".freeze, "sample/demo_pathway.rb".freeze, "sample/demo_prosite.rb".freeze, "sample/demo_psort.rb".freeze, "sample/demo_psort_report.rb".freeze, "sample/demo_pubmed.rb".freeze, "sample/demo_sequence.rb".freeze, "sample/demo_sirna.rb".freeze, "sample/demo_sosui_report.rb".freeze, "sample/demo_targetp_report.rb".freeze, "sample/demo_tmhmm_report.rb".freeze, "sample/enzymes.rb".freeze, "sample/fasta2tab.rb".freeze, "sample/fastagrep.rb".freeze, "sample/fastasort.rb".freeze, "sample/fastq2html.cwl".freeze, "sample/fastq2html.rb".freeze, "sample/fastq2html.testdata.yaml".freeze, "sample/fsplit.rb".freeze, "sample/gb2fasta.rb".freeze, "sample/gb2tab.rb".freeze, "sample/gbtab2mysql.rb".freeze, "sample/genes2nuc.rb".freeze, "sample/genes2pep.rb".freeze, "sample/genes2tab.rb".freeze, "sample/genome2rb.rb".freeze, "sample/genome2tab.rb".freeze, "sample/goslim.rb".freeze, "sample/gt2fasta.rb".freeze, "sample/na2aa.cwl".freeze, "sample/na2aa.rb".freeze, "sample/na2aa.testdata.yaml".freeze, "sample/pmfetch.rb".freeze, "sample/pmsearch.rb".freeze, "sample/rev_comp.cwl".freeze, "sample/rev_comp.rb".freeze, "sample/rev_comp.testdata.yaml".freeze, "sample/seqdatabase.ini".freeze, "sample/ssearch2tab.rb".freeze, "sample/tdiary.rb".freeze, "sample/test_restriction_enzyme_long.rb".freeze, "sample/tfastx2tab.rb".freeze, "sample/vs-genes.rb".freeze, "test/bioruby_test_helper.rb".freeze, "test/data/HMMER/hmmpfam.out".freeze, "test/data/HMMER/hmmsearch.out".freeze, "test/data/KEGG/1.1.1.1.enzyme".freeze, "test/data/KEGG/C00025.compound".freeze, "test/data/KEGG/D00063.drug".freeze, "test/data/KEGG/G00024.glycan".freeze, "test/data/KEGG/G01366.glycan".freeze, "test/data/KEGG/K02338.orthology".freeze, "test/data/KEGG/M00118.module".freeze, "test/data/KEGG/R00006.reaction".freeze, "test/data/KEGG/T00005.genome".freeze, "test/data/KEGG/T00070.genome".freeze, "test/data/KEGG/b0529.gene".freeze, "test/data/KEGG/ec00072.pathway".freeze, "test/data/KEGG/hsa00790.pathway".freeze, "test/data/KEGG/ko00312.pathway".freeze, "test/data/KEGG/map00030.pathway".freeze, "test/data/KEGG/map00052.pathway".freeze, "test/data/KEGG/rn00250.pathway".freeze, "test/data/KEGG/test.kgml".freeze, "test/data/SOSUI/sample.report".freeze, "test/data/TMHMM/sample.report".freeze, "test/data/aaindex/DAYM780301".freeze, "test/data/aaindex/PRAM900102".freeze, "test/data/bl2seq/cd8a_cd8b_blastp.bl2seq".freeze, "test/data/bl2seq/cd8a_p53_e-5blastp.bl2seq".freeze, "test/data/blast/2.2.15.blastp.m7".freeze, "test/data/blast/b0002.faa".freeze, "test/data/blast/b0002.faa.m0".freeze, "test/data/blast/b0002.faa.m7".freeze, "test/data/blast/b0002.faa.m8".freeze, "test/data/blast/blastp-multi.m7".freeze, "test/data/clustalw/example1-seqnos.aln".freeze, "test/data/clustalw/example1.aln".freeze, "test/data/command/echoarg2.bat".freeze, "test/data/command/echoarg2.sh".freeze, "test/data/embl/AB090716.embl".freeze, "test/data/embl/AB090716.embl.rel89".freeze, "test/data/fasta/EFTU_BACSU.fasta".freeze, "test/data/fasta/example1.txt".freeze, "test/data/fasta/example2.txt".freeze, "test/data/fastq/README.txt".freeze, "test/data/fastq/error_diff_ids.fastq".freeze, "test/data/fastq/error_double_qual.fastq".freeze, "test/data/fastq/error_double_seq.fastq".freeze, "test/data/fastq/error_long_qual.fastq".freeze, "test/data/fastq/error_no_qual.fastq".freeze, "test/data/fastq/error_qual_del.fastq".freeze, "test/data/fastq/error_qual_escape.fastq".freeze, "test/data/fastq/error_qual_null.fastq".freeze, "test/data/fastq/error_qual_space.fastq".freeze, "test/data/fastq/error_qual_tab.fastq".freeze, "test/data/fastq/error_qual_unit_sep.fastq".freeze, "test/data/fastq/error_qual_vtab.fastq".freeze, "test/data/fastq/error_short_qual.fastq".freeze, "test/data/fastq/error_spaces.fastq".freeze, "test/data/fastq/error_tabs.fastq".freeze, "test/data/fastq/error_trunc_at_plus.fastq".freeze, "test/data/fastq/error_trunc_at_qual.fastq".freeze, "test/data/fastq/error_trunc_at_seq.fastq".freeze, "test/data/fastq/error_trunc_in_plus.fastq".freeze, "test/data/fastq/error_trunc_in_qual.fastq".freeze, "test/data/fastq/error_trunc_in_seq.fastq".freeze, "test/data/fastq/error_trunc_in_title.fastq".freeze, "test/data/fastq/illumina_full_range_as_illumina.fastq".freeze, "test/data/fastq/illumina_full_range_as_sanger.fastq".freeze, "test/data/fastq/illumina_full_range_as_solexa.fastq".freeze, "test/data/fastq/illumina_full_range_original_illumina.fastq".freeze, "test/data/fastq/longreads_as_illumina.fastq".freeze, "test/data/fastq/longreads_as_sanger.fastq".freeze, "test/data/fastq/longreads_as_solexa.fastq".freeze, "test/data/fastq/longreads_original_sanger.fastq".freeze, "test/data/fastq/misc_dna_as_illumina.fastq".freeze, "test/data/fastq/misc_dna_as_sanger.fastq".freeze, "test/data/fastq/misc_dna_as_solexa.fastq".freeze, "test/data/fastq/misc_dna_original_sanger.fastq".freeze, "test/data/fastq/misc_rna_as_illumina.fastq".freeze, "test/data/fastq/misc_rna_as_sanger.fastq".freeze, "test/data/fastq/misc_rna_as_solexa.fastq".freeze, "test/data/fastq/misc_rna_original_sanger.fastq".freeze, "test/data/fastq/sanger_full_range_as_illumina.fastq".freeze, "test/data/fastq/sanger_full_range_as_sanger.fastq".freeze, "test/data/fastq/sanger_full_range_as_solexa.fastq".freeze, "test/data/fastq/sanger_full_range_original_sanger.fastq".freeze, "test/data/fastq/solexa_full_range_as_illumina.fastq".freeze, "test/data/fastq/solexa_full_range_as_sanger.fastq".freeze, "test/data/fastq/solexa_full_range_as_solexa.fastq".freeze, "test/data/fastq/solexa_full_range_original_solexa.fastq".freeze, "test/data/fastq/wrapping_as_illumina.fastq".freeze, "test/data/fastq/wrapping_as_sanger.fastq".freeze, "test/data/fastq/wrapping_as_solexa.fastq".freeze, "test/data/fastq/wrapping_original_sanger.fastq".freeze, "test/data/gcg/pileup-aa.msf".freeze, "test/data/genbank/CAA35997.gp".freeze, "test/data/genbank/SCU49845.gb".freeze, "test/data/genscan/sample.report".freeze, "test/data/go/selected_component.ontology".freeze, "test/data/go/selected_gene_association.sgd".freeze, "test/data/go/selected_wikipedia2go".freeze, "test/data/iprscan/merged.raw".freeze, "test/data/iprscan/merged.txt".freeze, "test/data/litdb/1717226.litdb".freeze, "test/data/medline/20146148_modified.medline".freeze, "test/data/meme/db".freeze, "test/data/meme/mast".freeze, "test/data/meme/mast.out".freeze, "test/data/meme/meme.out".freeze, "test/data/paml/codeml/control_file.txt".freeze, "test/data/paml/codeml/models/aa.aln".freeze, "test/data/paml/codeml/models/aa.dnd".freeze, "test/data/paml/codeml/models/aa.ph".freeze, "test/data/paml/codeml/models/alignment.phy".freeze, "test/data/paml/codeml/models/results0-3.txt".freeze, "test/data/paml/codeml/models/results7-8.txt".freeze, "test/data/paml/codeml/output.txt".freeze, "test/data/paml/codeml/rates".freeze, "test/data/pir/CRAB_ANAPL.pir".freeze, "test/data/prosite/prosite.dat".freeze, "test/data/refseq/nm_126355.entret".freeze, "test/data/rpsblast/misc.rpsblast".freeze, "test/data/sanger_chromatogram/test_chromatogram_abif.ab1".freeze, "test/data/sanger_chromatogram/test_chromatogram_scf_v2.scf".freeze, "test/data/sanger_chromatogram/test_chromatogram_scf_v3.scf".freeze, "test/data/sim4/complement-A4.sim4".freeze, "test/data/sim4/simple-A4.sim4".freeze, "test/data/sim4/simple2-A4.sim4".freeze, "test/data/soft/GDS100_partial.soft".freeze, "test/data/soft/GSE3457_family_partial.soft".freeze, "test/data/uniprot/p53_human.uniprot".freeze, "test/functional/bio/sequence/test_output_embl.rb".freeze, "test/functional/bio/test_command.rb".freeze, "test/network/bio/appl/blast/test_remote.rb".freeze, "test/network/bio/appl/test_blast.rb".freeze, "test/network/bio/appl/test_pts1.rb".freeze, "test/network/bio/db/kegg/test_genes_hsa7422.rb".freeze, "test/network/bio/io/test_pubmed.rb".freeze, "test/network/bio/io/test_togows.rb".freeze, "test/network/bio/test_command.rb".freeze, "test/runner.rb".freeze, "test/unit/bio/appl/bl2seq/test_report.rb".freeze, "test/unit/bio/appl/blast/test_ncbioptions.rb".freeze, "test/unit/bio/appl/blast/test_report.rb".freeze, "test/unit/bio/appl/blast/test_rpsblast.rb".freeze, "test/unit/bio/appl/clustalw/test_report.rb".freeze, "test/unit/bio/appl/gcg/test_msf.rb".freeze, "test/unit/bio/appl/genscan/test_report.rb".freeze, "test/unit/bio/appl/hmmer/test_report.rb".freeze, "test/unit/bio/appl/iprscan/test_report.rb".freeze, "test/unit/bio/appl/mafft/test_report.rb".freeze, "test/unit/bio/appl/meme/mast/test_report.rb".freeze, "test/unit/bio/appl/meme/test_mast.rb".freeze, "test/unit/bio/appl/meme/test_motif.rb".freeze, "test/unit/bio/appl/paml/codeml/test_rates.rb".freeze, "test/unit/bio/appl/paml/codeml/test_report.rb".freeze, "test/unit/bio/appl/paml/codeml/test_report_single.rb".freeze, "test/unit/bio/appl/paml/test_codeml.rb".freeze, "test/unit/bio/appl/sim4/test_report.rb".freeze, "test/unit/bio/appl/sosui/test_report.rb".freeze, "test/unit/bio/appl/targetp/test_report.rb".freeze, "test/unit/bio/appl/test_blast.rb".freeze, "test/unit/bio/appl/test_fasta.rb".freeze, "test/unit/bio/appl/test_pts1.rb".freeze, "test/unit/bio/appl/tmhmm/test_report.rb".freeze, "test/unit/bio/data/test_aa.rb".freeze, "test/unit/bio/data/test_codontable.rb".freeze, "test/unit/bio/data/test_na.rb".freeze, "test/unit/bio/db/embl/test_common.rb".freeze, "test/unit/bio/db/embl/test_embl.rb".freeze, "test/unit/bio/db/embl/test_embl_rel89.rb".freeze, "test/unit/bio/db/embl/test_embl_to_bioseq.rb".freeze, "test/unit/bio/db/embl/test_uniprot.rb".freeze, "test/unit/bio/db/embl/test_uniprotkb.rb".freeze, "test/unit/bio/db/embl/test_uniprotkb_new_part.rb".freeze, "test/unit/bio/db/fasta/test_defline.rb".freeze, "test/unit/bio/db/fasta/test_defline_misc.rb".freeze, "test/unit/bio/db/fasta/test_format_qual.rb".freeze, "test/unit/bio/db/genbank/test_common.rb".freeze, "test/unit/bio/db/genbank/test_genbank.rb".freeze, "test/unit/bio/db/genbank/test_genpept.rb".freeze, "test/unit/bio/db/kegg/test_compound.rb".freeze, "test/unit/bio/db/kegg/test_drug.rb".freeze, "test/unit/bio/db/kegg/test_enzyme.rb".freeze, "test/unit/bio/db/kegg/test_genes.rb".freeze, "test/unit/bio/db/kegg/test_genome.rb".freeze, "test/unit/bio/db/kegg/test_glycan.rb".freeze, "test/unit/bio/db/kegg/test_kgml.rb".freeze, "test/unit/bio/db/kegg/test_module.rb".freeze, "test/unit/bio/db/kegg/test_orthology.rb".freeze, "test/unit/bio/db/kegg/test_pathway.rb".freeze, "test/unit/bio/db/kegg/test_reaction.rb".freeze, "test/unit/bio/db/pdb/test_pdb.rb".freeze, "test/unit/bio/db/sanger_chromatogram/test_abif.rb".freeze, "test/unit/bio/db/sanger_chromatogram/test_scf.rb".freeze, "test/unit/bio/db/test_aaindex.rb".freeze, "test/unit/bio/db/test_fasta.rb".freeze, "test/unit/bio/db/test_fastq.rb".freeze, "test/unit/bio/db/test_gff.rb".freeze, "test/unit/bio/db/test_go.rb".freeze, "test/unit/bio/db/test_lasergene.rb".freeze, "test/unit/bio/db/test_litdb.rb".freeze, "test/unit/bio/db/test_medline.rb".freeze, "test/unit/bio/db/test_nbrf.rb".freeze, "test/unit/bio/db/test_newick.rb".freeze, "test/unit/bio/db/test_nexus.rb".freeze, "test/unit/bio/db/test_prosite.rb".freeze, "test/unit/bio/db/test_qual.rb".freeze, "test/unit/bio/db/test_rebase.rb".freeze, "test/unit/bio/db/test_soft.rb".freeze, "test/unit/bio/io/flatfile/test_autodetection.rb".freeze, "test/unit/bio/io/flatfile/test_buffer.rb".freeze, "test/unit/bio/io/flatfile/test_splitter.rb".freeze, "test/unit/bio/io/test_fastacmd.rb".freeze, "test/unit/bio/io/test_flatfile.rb".freeze, "test/unit/bio/io/test_togows.rb".freeze, "test/unit/bio/sequence/test_aa.rb".freeze, "test/unit/bio/sequence/test_common.rb".freeze, "test/unit/bio/sequence/test_compat.rb".freeze, "test/unit/bio/sequence/test_dblink.rb".freeze, "test/unit/bio/sequence/test_na.rb".freeze, "test/unit/bio/sequence/test_quality_score.rb".freeze, "test/unit/bio/sequence/test_ruby3.rb".freeze, "test/unit/bio/sequence/test_sequence_masker.rb".freeze, "test/unit/bio/test_alignment.rb".freeze, "test/unit/bio/test_command.rb".freeze, "test/unit/bio/test_db.rb".freeze, "test/unit/bio/test_feature.rb".freeze, "test/unit/bio/test_location.rb".freeze, "test/unit/bio/test_map.rb".freeze, "test/unit/bio/test_pathway.rb".freeze, "test/unit/bio/test_reference.rb".freeze, "test/unit/bio/test_sequence.rb".freeze, "test/unit/bio/test_tree.rb".freeze, "test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb".freeze, "test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb".freeze, "test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb".freeze, "test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb".freeze, "test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb".freeze, "test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb".freeze, "test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb".freeze, "test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb".freeze, "test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_analysis.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_dense_int_array.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_double_stranded.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_single_strand.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_sorted_num_array.rb".freeze, "test/unit/bio/util/restriction_enzyme/test_string_formatting.rb".freeze, "test/unit/bio/util/test_color_scheme.rb".freeze, "test/unit/bio/util/test_contingency_table.rb".freeze, "test/unit/bio/util/test_restriction_enzyme.rb".freeze, "test/unit/bio/util/test_sirna.rb".freeze] s.homepage = "http://bioruby.org/".freeze s.licenses = ["Ruby".freeze] s.rdoc_options = ["--main".freeze, "README.rdoc".freeze, "--title".freeze, "BioRuby API documentation".freeze, "--exclude".freeze, "\\.yaml\\z".freeze, "--line-numbers".freeze, "--inline-source".freeze] s.rubygems_version = "3.5.10".freeze s.summary = "Bioinformatics library".freeze end