lib/viral_seq/muscle.rb in viral_seq-1.0.3 vs lib/viral_seq/muscle.rb in viral_seq-1.0.4

@@ -36,10 +36,10 @@
     #   seq2 = 'AAGCTTAGGACG'
     #   aligned_seqs = ViralSeq::Muscle.align(seq1,seq2)
     #   => ["AAGGCGTAGGAC-", "-AAGCTTAGGACG"]
 
     def self.align(ref_seq = "", test_seq = "", path_to_muscle = false)
-      temp_dir=File.dirname($0)
+      temp_dir = Dir.home
       temp_file = temp_dir + "/_temp_muscle_in"
       temp_aln = temp_dir + "/_temp_muscle_aln"
       name = ">test"
       temp_in = File.open(temp_file,"w")
       temp_in.puts ">ref"