test/commands/test_prot2pept.rb in unipept-1.4.0 vs test/commands/test_prot2pept.rb in unipept-1.4.1

- old
+ new

@@ -2,50 +2,50 @@ module Unipept class Prot2peptTestCase < Unipept::TestCase def test_normal_input out, _err = capture_io_with_input('AALTERAALTERPAALTER') do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal("AALTER\nAALTERPAALTER", out.chomp) out, _err = capture_io_with_input('AALTERAAL*TERPAALTER') do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal("AALTER\nAAL\nTERPAALTER", out.chomp) out, _err = capture_io_with_input('KRKPR') do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal("K\nR\nKPR", out.chomp) - out, _err = capture_io_with_input(%w(AALTERAALTERPAALTER AALTERAA)) do - Commands::Prot2pept.run(%w()) + out, _err = capture_io_with_input(%w[AALTERAALTERPAALTER AALTERAA]) do + Commands::Prot2pept.run(%w[]) end assert_equal("AALTER\nAALTERPAALTER\nAALTER\nAA", out.chomp) end def test_fasta_input out, _err = capture_io_with_input(">AKA\nAALTERAALTERPAALTER") do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal(">AKA\nAALTER\nAALTERPAALTER", out.chomp) out, _err = capture_io_with_input(">AKA\nAAL\nT\nERAALTER\nP\nAALTER") do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal(">AKA\nAALTER\nAALTERPAALTER", out.chomp) out, _err = capture_io_with_input(">AKA\nAAL\nT\n>\nERAALTER\nP\nAALTER") do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal(">AKA\nAALT\n>\nER\nAALTERPAALTER", out.chomp) end def test_default_pattern default_out, _err = capture_io_with_input('AALTERAALTERPAALTER') do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal("AALTER\nAALTERPAALTER", default_out.chomp) pattern_out, _err = capture_io_with_input('AALTERAALTERPAALTER') do Commands::Prot2pept.run(['-p', '([KR])([^P])']) @@ -58,11 +58,11 @@ assert_equal(default_out, pattern_out) end def test_pattern out, _err = capture_io_with_input('AALTERAALTERPAALTER') do - Commands::Prot2pept.run(%w()) + Commands::Prot2pept.run(%w[]) end assert_equal("AALTER\nAALTERPAALTER", out.chomp) out, _err = capture_io_with_input('AALTERAALTERPAALTER') do Commands::Prot2pept.run(%w(-p ([KR])([^A]))) @@ -76,10 +76,10 @@ end def test_help out, _err = capture_io_while do assert_raises SystemExit do - Commands::Prot2pept.run(%w(-h)) + Commands::Prot2pept.run(%w[-h]) end end assert(out.include?('show help for this command')) end end