README.rdoc in snp-search-0.32.0 vs README.rdoc in snp-search-0.33.0
- old
+ new
@@ -36,9 +36,11 @@
-h help message
Usage:
snp-search -n my_snp_db.sqlite3 -d my_ref.gbk -v my_vcf_file.vcf
+Note: The strain names in your database will be taken from your vcf file so make sure they are named appropriately in your vcf file.
+
== Output
The output is your database in sqlite3 format. If you like to view your table(s) and perform queries you can type
sqlite3 snp_db.sqlite3
Alternatively, you may download a SQL tool to view your database (e.g. SQLite sorcerer).