plugin_short_insert.rb in seqtrimnext-2.0.52

- old
+ new

@@ -84,19 +84,10 @@
     # puts " subinsert #{sub_inserts.join(' ')}" 
     
     return sub_inserts
   end
   
- #Begins the plugin1's execution to warn if the inserted is so short 
- def execute(seqs)
-   seqs.each do |s|
-       exec_seq(s)
-    end
-  end
-
-
-  def exec_seq(seq)
-    
+  def exec_seq(seq,blast_query)
     $LOG.debug "[#{self.class.to_s}, seq: #{seq.seq_name}]: checking if insert of sequence has enought size" 
     # puts "inserto #{seq.insert_start}, #{seq.insert_end} size #{seq.seq_fasta.size}" 
     
     if (seq.seq_fasta.size > 0)
       