plugin_linker.rb in seqtrimnext-2.0.46

- old
+ new

@@ -81,11 +81,11 @@
 
   def do_blasts(seqs)
      # find MIDS  with less results than max_target_seqs value 
      blast = BatchBlast.new("-db #{@params.get_param('linkers_db')}",'blastn'," -task blastn-short  -evalue #{@params.get_param('blast_evalue_linkers')} -perc_identity #{@params.get_param('blast_percent_linkers')}")  #get linkers          
 
-     $LOG.info('BLAST:'+blast.get_blast_cmd)
+     $LOG.debug('BLAST:'+blast.get_blast_cmd)
 
      fastas=[]
 
      seqs.each do |seq|
       fastas.push ">"+seq.seq_name
@@ -104,10 +104,10 @@
 
   def exec_seq(seq,blast_query)
     if blast_query.query_id != seq.seq_name
       raise "Blast and seq names does not match, blast:#{blast_query.query_id} sn:#{seq.seq_name}"
     end
-     $LOG.info "[#{self.class.to_s}, seq: #{seq.seq_name}]: looking for linker into the sequence"
+     $LOG.debug "[#{self.class.to_s}, seq: #{seq.seq_name}]: looking for linker into the sequence"
      
      # key_beg,key_end=search_key(seq,0,3)   if false       
      # blast = BatchBlast.new("-subject #{File.join($FORMATTED_DB_PATH,'linkers.fasta')}",'blastn'," -task blastn  -evalue #{@params.get_param('blast_evalue_linkers')} -perc_identity #{@params.get_param('blast_percent_linkers')}")  #get linkers
      # blast = BatchBlast.new("-db #{File.join($FORMATTED_DB_PATH,'linkers.fasta')}",'blastn'," -task blastn-short  -evalue #{@params.get_param('blast_evalue_linkers')} -perc_identity #{@params.get_param('blast_percent_linkers')}")  #get linkers          
      # 