plugin_indeterminations.rb in seqtrimnext-2.0.52

- old
+ new

@@ -138,18 +138,11 @@
  	res = (pos>=(seq_fasta.length-max_to_end))
  	
  end
  
   
-   #Begins the pluginKey's execution to warn where is a key in the sequence "seq"    
-  def execute(seqs)
-   seqs.each do |s|
-         exec_seq(s)
-     end
-   end
+ def exec_seq(seq,blast_query)
 
-
-   def exec_seq(seq)
      $LOG.debug "[#{self.class.to_s}, seq: #{seq.seq_name}]: removing indeterminations N+" 
      
      actions=[]
      
      # find simple indeterminations at end of sequence