plugin_extract_inserts.rb in seqtrimnext-2.0.52

- old
+ new

@@ -274,19 +274,10 @@
 #    end
 #    
     return sub_inserts
   end
   
-  
-  # Begins the plugin1's execution to warn that there is linker  into the sequence
- def execute(seqs)
-    seqs.each do |s|
-       exec_seq(s)
-    end
-  end
-
-
-  def exec_seq(seq)
+  def exec_seq(seq,blast_query)
      $LOG.debug "[#{self.class.to_s}, seq: #{seq.seq_name}]: extract inserts"    
           
      # puts "INSERTO ANTES LINKER INSERT:"+seq.seq_fasta
 
      #look for ActionLinker into the sequence's actions