bin/split_fasta.rb in seqtrimnext-2.0.55 vs bin/split_fasta.rb in seqtrimnext-2.0.56

@@ -7,39 +7,36 @@
   puts "#{$0} FASTA_FILE OUTPUT_NAME SEQS_PER_FILE_COUNT"
   exit
 end
 
 
-  
+
 fastq = ARGV.shift
 output_name = ARGV.shift
 split_by = ARGV.shift.to_i
 
 
 file_index=1
 out=File.new("#{output_name}#{file_index}.fasta",'w')
-
 fqr=FastaQualFile.new(fastq)
 
 count = 0
 
 fqr.each do |seq_name,seq_fasta,comments|
-  
 
-  out.puts(">#{seq_name+i.to_s} #{comments}")
-  out.puts(seq_fasta)
+  if (count >= split_by)
+    count=0
 
-  count +=1
-
-  if (count % split_by) == 0 
-      
     file_index +=1
     out.close
     out=File.new("#{output_name}#{file_index}.fasta",'w')
-
   end
-end
 
- 
-out.close
-fqr.close
+  out.puts(">#{seq_name} #{comments}")
+  out.puts(seq_fasta)
 
+  count +=1
+
+end
+
+out.close if out
+fqr.close
\ No newline at end of file