History.txt in semin-egor-0.9.2 vs History.txt in semin-egor-0.9.3

@@ -1,49 +1,38 @@
-== 0.9.0 version
+== 0.9.0, released 2009-2-13
 
-* 5 major enhancement:
-    * --heatmap option has been added to generate heat maps from substitution tables
-    * --heatmap-format option has been added for heat map figure format (PNG, GIF, JPG, BMP, and PDF)
-    * --heatmap-stem option has been added to set a file name for total heat maps figure when --heatmap 1 or 2 is set
-    * --heatmap-columns option has been added to set the number of tables in a row when --heatmap 1 or 2 is set
-    * --heatmap-value option has been added to print values in the cells of heat maps
+* Added --heatmap option for heat map generation from substitution tables
+* Added --heatmap-format option for heat map figure format (PNG, GIF, JPG, BMP, and PDF)
+* Added --heatmap-stem option to set a file name of total heat maps figure when --heatmap 1 or 2 is set
+* Added --heatmap-columns option to set the number of tables in a row when --heatmap 1 or 2 is set
+* Added --heatmap-value option to print values in the cells of heat maps
+* Renamed --noround option to --noroundoff
+* 'simple_memoize' RubyGem package is no longer required
 
-* 2 minor enhancement:
-    * --noround option has been renamed to --noroundoff
-    * 'simple_memoize' RubyGem package is no longer required
+== 0.0.5, released 2009-1-23
 
-== 0.0.5 2009-1-23
+* Warns if your sigma value is too big for any amino acid count (minimum ratio of amino acid count to sigma value: 500.0)
+* Added --augosigma option to avoid excessive influence of background frequencies
+* Added --noround option was added to get original log odds ratios
+* Added --p1smooth option was added to enable p1 probability smoothing when partial smoothing
+* Fixed a bug in p2 probability calculation of the partial smoothing procedure
+* Fixed a bug in total probability/log odds ratio calculation
+* Changed default verbosity from ERROR to WARN
+* Refactored codes to be more human readable and DRY
 
-* 4 major enhancement:
-    * Egor warns if your sigma value is too big for any amino acid count (minimum ratio of amino acid count to sigma value: 500.0)
-    * --augosigma option was added to avoid excessive influence of background frequencies
-    * a bug in p2 probability calculation of the partial smoothing procedure was fixed
-    * a bug in total probability/log odds ratio calculation was fixed
+== 0.0.4, released 2008-12-15
 
-* 4 minor enhancement:
-    * --noround option was added to get original log odds ratios
-    * --p1smooth option was added to enable p1 probability smoothing when partial smoothing
-    * default verbosity has been changed from ERROR to WARN
-    * codes were refactored to be more human readable and DRY
+* Fixed a bug to generated log-odds ratio matrices with --nosmooth option
+* Copes with no observations or mutations
 
-== 0.0.4 2008-12-15
-
-* 2 major enhancement:
-    * log-odds ratio matrices can be generated with --nosmooth option
-    * safe handling for zero observations or mutations of amino acids
-
 == 0.0.3 2008-12-09
 
-* 2 major enhancement:
-    * An option '--cys (-j) 2' added not to distinguish J from C, so 'disulphide bond' environment feature is not prerequisite
-    * Masking works for target amino acid, too
+* Added --cys (-j) 2 not to distinguish J from C, so 'disulphide bond' environment feature is not prerequisite
+* Fixed a bug to make masking works for target amino acid, too
 
-== 0.0.2 2008-11-13
+== 0.0.2, released 2008-11-13
 
-* 2 major enhancement:
-    * Constrained environment features are properly handled
-    * Sane log-odds ratio matrices are produced
+* Supports user provided constrained environment features are properly handled
 
-== 0.0.1 2008-11-07
+== 0.0.1, released 2008-11-07
 
-* 1 major enhancement:
-    * Initial release
+* Initial release