features/sequence.feature in scaffolder-0.4.3 vs features/sequence.feature in scaffolder-0.4.4

@@ -1,20 +1,42 @@
 Feature: The sequence keyword
   In order to place contigs the scaffold
   A user can use the sequence keyword
 
   Scenario: A scaffold with a single sequence keyword
-    Given the scaffold file has the sequences:
-      | name | nucleotides |
-      | seq  | ATGCC       |
-    When creating a scaffolder object
+    Given a file named "sequence.fna" with:
+      """
+      >seq
+      TTTTT
+      """
+    Given a file named "scaffold.yml" with:
+      """
+      ---
+        -
+          sequence:
+            source: "seq"
+      """
+    When creating a scaffold with the files "scaffold.yml" and "sequence.fna"
     Then the scaffold should contain 1 sequence entries
-    And the scaffold sequence should be ATGCC
+    And the scaffold sequence should be TTTTT
 
   Scenario: A scaffold with a two sequence keywords
-    Given the scaffold file has the sequences:
-      | name | nucleotides |
-      | seq1 | ATGCC       |
-      | seq2 | ATGCC       |
-    When creating a scaffolder object
+    Given a file named "sequence.fna" with:
+      """
+      >seq1
+      TTT
+      >seq2
+      AAA
+      """
+    Given a file named "scaffold.yml" with:
+      """
+      ---
+        -
+          sequence:
+            source: "seq1"
+        -
+          sequence:
+            source: "seq2"
+      """
+    When creating a scaffold with the files "scaffold.yml" and "sequence.fna"
     Then the scaffold should contain 2 sequence entries
-    And the scaffold sequence should be ATGCCATGCC
+    And the scaffold sequence should be TTTAAA