README.rdoc in scaffolder-0.2.6 vs README.rdoc in scaffolder-0.4.0
- old
+ new
@@ -1,25 +1,37 @@
-= scaffolder
+== Synopsis
-Description goes here.
+A simple genome scaffolder API for merging sequence contigs to build a continuous
+draft sequence. The draft sequence is constructed through specifying the order of
+contigs in in human-readable YAML files. Since the draft genome is specified by the
+scaffold YAML it is easy to remove or manipulate already sequences. In addition as
+the scaffold file is easy to edit and is ideal for version control and
+repeatability.
-== Note on Patches/Pull Requests
-
-* Fork the project.
-* Make your feature addition or bug fix.
-* Add tests for it. This is important so I don't break it in a
- future version unintentionally.
-* Commit, do not mess with rakefile, version, or history.
- (if you want to have your own version, that is fine but bump version in a commit by itself I can ignore when I pull)
-* Send me a pull request. Bonus points for topic branches.
+== Feature List
-== Copyright
+* Construct a draft sequence scaffold using human-readable and versionable
+ plain text files.
+* A simple and extensible Ruby API to traverse the scaffold.
-Copyright (c) 2010 Michael Barton. See LICENSE for details.
+== Installing
-== Notes
+Ruby and RubyGems are required to use scaffolder. Scaffolder is installed on
+the command line using:
-Inserts processed are processed in reverse order according to end position. Last insert added up until first insert. Done to preserve insert coordinates.
+ $ gem install scaffolder
-Overlapping inserts may cause unexpected behaviour
+== Documentation
-Sequence reversed after inserts have been added.
+See the Scaffolder class for getting started with Scaffolder.
+
+== Contact
+
+Scaffolder was developed by Michael Barton (www.michaelbarton.me.uk). Pull
+requests, patches and bug reports are welcome. The source code is available on
+github[http://github.com/michaelbarton/scaffolder]. Bug reports and feature
+requests may also be made there.
+
+== Copyright
+
+Scaffolder © 2010 by Michael Barton. Scaffolder is licensed under the MIT
+license. Please see the LICENSE document for more information.