scaffolder-sequence.1.ronn in scaffolder-tools-0.1.3

- old
+ new

@@ -21,21 +21,19 @@
 
   * `--definition`=[<definition>]:
     Fasta definition line added at the top of the assembled sequence. The
     default is to use the SHA1 hash of the sequence as the definition.
 
-  * `--no-sequence-hash`:
-    Do not append the SHA1 hash of the assembled sequence to the definition
-    line.
+  * `--with-sequence-digest`:
+     Add an SHA1 digest of the assembled sequence to the definition line. This
+     may be useful for comparing large scaffold assemblies for identity.
 
 ## EXAMPLES
 
 Assemble sequence using a scaffold file and fasta formatted set of contigs.
 Pipe the assembly into another file.
 
     $ scaffolder-sequence scaffold.yml contigs.fna > assembly.fna
-
-## BUGS
 
 ## BUGS
 
 **Scaffolder-sequence** is written in Ruby and depends on the scaffolder,
 BioRuby, configliere and ronn gems. See the Gemfile in the scaffolder-tools gem