test/rbbt/hpc/test_batch.rb in rbbt-util-5.34.27 vs test/rbbt/hpc/test_batch.rb in rbbt-util-5.35.1

@@ -4,43 +4,43 @@
 
 Workflow.require_workflow "Sample"
 Workflow.require_workflow "HTS"
 class TestSLURM < Test::Unit::TestCase
 
-  def _test_batch_options
+  def test_batch_options
     job = Sample.job(:mutect2, "small", :reference => "hg38")
 
     TmpFile.with_file do |batch_dir|
 
       options = HPC::BATCH.batch_options(job, :batch_dir => batch_dir, :batch_modules => 'java')
 
       iii options
     end
   end
 
-  def _test_template
+  def test_template
     job = Sample.job(:mutect2, "small", :reference => "hg38")
 
     TmpFile.with_file do |batch_dir|
 
       template = HPC::BATCH.job_template(job, :batch_dir => batch_dir, :batch_modules => 'java')
       ppp template
 
     end
   end
 
-  def _test_template_singularity
+  def test_template_singularity
     job = Sample.job(:mutect2, "small", :reference => "hg38")
 
     TmpFile.with_file do |batch_dir|
 
       template = HPC::BATCH.job_template(job, :batch_dir => batch_dir, :batch_modules => 'java', :singularity => true)
       ppp template
 
     end
   end
 
-  def _test_template_contain
+  def test_template_contain
     job = Sample.job(:mutect2, "small", :reference => "hg38")
 
     TmpFile.with_file do |batch_dir|
 
       template = HPC::BATCH.job_template(job, :batch_dir => batch_dir, :batch_modules => 'java', :contain_and_sync => true, :wipe_container => 'force')