share/rbbt_commands/lsf/task in rbbt-util-5.39.0 vs share/rbbt_commands/lsf/task in rbbt-util-5.40.0

- old
+ new

@@ -30,20 +30,21 @@ -q--queue* Queue -a--account* Account -p--partition* Partition -t--task_cpus* Tasks -tm--time* Time --m--mem* SLURM minimum memory ---gres* SLURM Generic resources --mcpu--mem_per_cpu* SLURM minimum memory per CPU --lin--licenses* SLURM licenses --cons--constraint* SLURM constraint +-m--mem* minimum memory +--gres* Generic resources +-mcpu--mem_per_cpu* minimum memory per CPU +-lin--licenses* licenses +-cons--constraint* constraint -W--workflows* Additional workflows -rmb--remove_batch_dir Remove the batch working directory (command, STDIN, exit status, ...) -bs--batch_system* Batch system to use: auto, lsf, slurm (default is auto-detect) -lmod--lua_modules* Lua Modules to load -co--conda* Conda environment to use +-OR--orchestration_rules* Orchestration rules EOF batch_system = $slurm_options.delete :batch_system batch_system ||= 'auto' @@ -56,12 +57,12 @@ def run(*args) if done? self.load else begin - Log.debug "Issuing SLURM job for #{self.path}" + Log.debug "Issuing BATCH job for #{self.path}" HPC::BATCH_MODULE.run_job(self, $slurm_options) - rescue HPC::SBATCH + rescue HPC::BATCH_DRY_RUN end end end end