share/rbbt_commands/lsf/task in rbbt-util-5.34.27 vs share/rbbt_commands/lsf/task in rbbt-util-5.35.1

@@ -1,13 +1,16 @@
 #!/usr/bin/env ruby
 
 require 'rbbt/util/simpleopt'
 require 'rbbt/workflow'
 require 'rbbt/workflow/usage'
+require 'rbbt/workflow/remote_workflow'
 require 'rbbt/hpc'
 require 'time'
 
+rbbt_options = SOPT::GOT_OPTIONS
+
 $slurm_options = SOPT.get <<EOF
 -dr--dry_run Print only the template
 -cj--clean_job Clean job
 --drbbt* Use development version of rbbt 
 -sing--singularity Use Singularity
@@ -54,14 +57,22 @@
     if done?
       self.load
     else
       begin
         Log.debug "Issuing SLURM job for #{self.path}"
-        HPC::BATCH_MODULE.run_job(self, SOPT::GOT_OPTIONS.merge($slurm_options)) 
+        HPC::BATCH_MODULE.run_job(self, $slurm_options) 
       rescue HPC::SBATCH
       end
     end
   end
 end
 
-ARGV.concat ["-W", $slurm_options[:workflows]] if $slurm_options[:workflows]
+module RemoteStep::SSH
+
+  def _run
+    RemoteWorkflow::SSH.run_slurm_job(File.join(base_url, task.to_s), @input_id, @base_name, $slurm_options)
+  end
+
+end
+
+SOPT.current_options = rbbt_options
 load Rbbt.share.rbbt_commands.workflow.task.find