lib/rbbt/util/cmd.rb in rbbt-util-5.31.9 vs lib/rbbt/util/cmd.rb in rbbt-util-5.31.10

@@ -8,9 +8,17 @@
   TOOLS = IndiferentHash.setup({})
   def self.tool(tool, claim = nil, test = nil, cmd = nil, &block)
     TOOLS[tool] = [claim, test, block, cmd]
   end
 
+  def self.conda(tool, env = nil, channel = 'bioconda')
+    if env
+      CMD.cmd("bash -l -c '(conda activate #{env} && conda install #{tool} -c #{channel})'")      
+    else
+      CMD.cmd("bash -l -c 'conda install #{tool} -c #{channel}'")      
+    end
+  end
+
   def self.get_tool(tool)
     return tool.to_s unless TOOLS[tool]
 
     @@init_cmd_tool ||= IndiferentHash.setup({})
     if !@@init_cmd_tool[tool]