lib/rbbt/util/R.rb in rbbt-util-5.5.68 vs lib/rbbt/util/R.rb in rbbt-util-5.6.0

@@ -66,9 +66,15 @@
     else
       raise "Type of object not known: #{ object.inspect }"
     end
   end
 
+  def self.tsv(file, options = {})
+    options = Misc.add_defaults :header_hash => '', :sep => / +/, :type => :list, :key_field => 'ID'
+    key_field = Misc.process_options options, :key_field
+    clean = CMD.cmd('grep -v WARNING', :in => file, :pipe => true)
+    TSV.open(clean, options).tap{|tsv| tsv.key_field = key_field }
+  end
 end
 
 module TSV
 
   def R(script, open_options = {})