test/rbbt/sources/test_go.rb in rbbt-sources-3.0.32 vs test/rbbt/sources/test_go.rb in rbbt-sources-3.0.33

@@ -1,21 +1,76 @@
 require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
 
+require 'rbbt/workflow'
+Workflow.require_workflow "Genomics"
+
+require 'rbbt/entity/gene'
 require 'rbbt/sources/go'
 require 'test/unit'
 
+
 class TestGo < Test::Unit::TestCase
-  def test_go
+  def _test_go
     assert_match('vacuole inheritance',GO::id2name('GO:0000011'))
     assert_equal(['vacuole inheritance','alpha-glucoside transport'], GO::id2name(['GO:0000011','GO:0000017']))
   end
 
-  def test_ancestors
+  def _test_ancestors
     assert GO.id2ancestors('GO:0000001').include? 'GO:0048308'
   end
 
-  def test_namespace
+  def _test_namespace
     assert_equal 'biological_process', GO.id2namespace('GO:0000001')
+  end
+
+  def _test_ancestors
+    term = GOTerm.setup("GO:0005634")
+  end
+
+  def _test_ancestry
+    term = GOTerm.setup("GO:0005634")
+    term.ancestry.include? "GO:0005634"
+  end
+
+  def _test_ancestry_in
+    term = GOTerm.setup("GO:0005634")
+    valid = %w(GO:0005886 GO:0005634 GO:0005730 GO:0005829)
+    iii GO.ancestors_in(term, valid)
+  end
+
+  def test_groups
+    list = Gene.setup(%w(ENSG00000009413
+                        ENSG00000038295
+                        ENSG00000038427
+                        ENSG00000047457
+                        ENSG00000058668
+                        ENSG00000065361
+                        ENSG00000070778
+                        ENSG00000072364
+                        ENSG00000073711
+                        ENSG00000075420
+                        ENSG00000088387
+                        ENSG00000096384
+                        ENSG00000100345
+                        ENSG00000102804
+                        ENSG00000102910
+                        ENSG00000103657
+                        ENSG00000104043
+                        ENSG00000106772
+                        ENSG00000107186
+                        ENSG00000108262
+                        ENSG00000261163
+                        ENSG00000263077
+                        ENSG00000101654
+                        ENSG00000111012), :organism => Organism.default_code("Hsa"))
+
+    valid = %w(GO:0005886 GO:0005634 GO:0005730 GO:0005829 )
+    iii GO.group_genes(list, valid)
+  end
+
+  def _test_nucleolus
+    nuo = "GO:0005730"
+    nu = "GO:0005634"
   end
 end