lib/rbbt/sources/organism.rb in rbbt-sources-3.2.14 vs lib/rbbt/sources/organism.rb in rbbt-sources-3.2.15
- old
+ new
@@ -71,9 +71,10 @@
Rbbt.claim Rbbt.software.opt.bin.liftOver, :proc do |file|
Open.mkdir File.dirname(file) unless File.directory?(file)
url = "http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver"
CMD.cmd_log("wget '#{url}' -O '#{file}'")
CMD.cmd("chmod 0755 '#{file}'")
+ Rbbt.set_software_env
nil
end
CMD.tool :liftOver, Rbbt.software.opt.bin.liftOver