blast.rb in quorum-0.8.0

- old
+ new

@@ -362,15 +362,22 @@
                 @data[:align_len]   = hsp.align_len
                 @data[:qseq]        = hsp.qseq
                 @data[:hseq]        = hsp.hseq
                 @data[:midline]     = hsp.midline
 
+                # Calculate percent identity
+                @data[:pct_identity] = (
+                  @data[:identity].to_f / @data[:align_len].to_f
+                ) * 100
+
+                # Calculate mismatch
+                @data[:mismatch] = @data[:align_len] - @data[:identity]
+
                 if @data[:bit_score] &&
                   (@data[:bit_score].to_i > @min_score.to_i)
                   @results = true
                   save_hsp_results
                 end
-
               end
             end
           end
         end
 