lib/parse_fasta.rb in parse_fasta-0.0.5 vs lib/parse_fasta.rb in parse_fasta-1.0.0
- old
+ new
@@ -1,31 +1,21 @@
# Copyright 2014 Ryan Moore
# Contact: moorer@udel.edu
-
-# This program is free software: you can redistribute it and/or modify
+#
+# This file is part of parse_fasta.
+#
+# parse_fasta is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
-
-# This program is distributed in the hope that it will be useful,
+#
+# parse_fasta is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
-
+#
# You should have received a copy of the GNU General Public License
-# along with this program. If not, see <http://www.gnu.org/licenses/>.
+# along with parse_fasta. If not, see <http://www.gnu.org/licenses/>.
-require "parse_fasta/version"
-
-class File
- def each_record
- self.each("\n>") do |line|
- header, sequence = parse_line(line)
- yield header.strip, sequence
- end
- end
-
- private
- def parse_line(line)
- line.chomp.split("\n", 2).map { |s| s.gsub(/\n|>/, '') }
- end
-end
+require 'parse_fasta/version'
+require 'parse_fasta/fasta_file'
+require 'parse_fasta/sequence'