README.md in parse_fasta-1.7.1 vs README.md in parse_fasta-1.7.2
- old
+ new
@@ -25,11 +25,11 @@
lightweight than BioRuby. And more fun! ;)
## Documentation ##
Checkout
-[parse_fasta docs](http://rubydoc.info/gems/parse_fasta/1.7.0/frames)
+[parse_fasta docs](http://rubydoc.info/gems/parse_fasta/1.7.2/frames)
for the full api documentation.
## Usage ##
Some examples...
@@ -67,9 +67,19 @@
## Versions ##
### 1.7 ###
Add `SeqFile#to_hash`, `FastaFile#to_hash` and `FastqFile#to_hash`.
+
+#### 1.7.2 ####
+
+Strip spaces (not all whitespace) from `Sequence` and `Quality` strings.
+
+Some alignment fastas have spaces for easier reading. Strip these
+out. For consistency, also strips spaces from `Quality` strings. If
+there are spaces that don't match in the quality and sequence in a
+fastQ file, then things will get messed up in the FastQ file. FastQ
+shouldn't have spaces though.
### 1.6 ###
Added `SeqFile` class, which accepts either fastA or fastQ files. It
uses FastaFile and FastqFile internally. You can use this class if you