lib/bio/appl/blast.rb in ngoto-bio-1.3.0.5000 vs lib/bio/appl/blast.rb in ngoto-bio-1.3.1.5000

@@ -255,11 +255,11 @@
     def options=(ary)
       @options = set_options(ary)
     end
 
     # Server to submit the BLASTs to
-    attr_accessor :server
+    attr_reader :server
 
     # Sets server to submit the BLASTs to.
     # The exec_xxxx method should be defined in Bio::Blast or
     # Bio::Blast::Remote::Xxxx class.
     def server=(str)
@@ -397,10 +397,10 @@
       ncbiopt = NCBIOptions.new(a)
 
       if fmt = ncbiopt.get('-m') then
         @format = fmt.to_i
       else
-        Bio::Blast::Report #dummy to load XMLParser or REXML
+        dummy = Bio::Blast::Report #dummy to load XMLParser or REXML
         if defined?(XMLParser) or defined?(REXML)
           @format ||= 7
         else
           @format ||= 8
         end