neurohmmer in neurohmmer-0.1.2

- old
+ new

@@ -1,7 +1,8 @@
 #!/usr/bin/env ruby
 require 'optparse'
+require 'English'
 
 require 'neurohmmer'
 require 'neurohmmer/version'
 
 opt = {}
@@ -34,11 +35,11 @@
   opts.on('-s', '--signalp_path path',
           'The full path to signalp executable') do |s|
     opt[:signalp_path] = s
   end
 
-  opts.on('-b', '--hmmer_bin_path path',
+  opts.on('-H', '--hmmer_bin_path path',
           'The full path to hmmer binaries directory') do |h|
     opt[:hmmer_path] = h
   end
 
   opt[:num_threads] = 1
@@ -68,10 +69,10 @@
   elsif ARGV.length == 0
     $stderr.puts optparse
     exit 1
   end
 rescue OptionParser::ParseError
-  $stderr.print 'Error: ' + $ERROR_INFO.to_s + '\n'
+  $stderr.print 'Error: ' + $ERROR_INFO.to_s + "\n"
   exit 1
 end
 
 opt[:input_file] = ARGV[0]
 